Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FIP50_RS05345 Genome accession   NZ_CP050173
Coordinates   1111090..1111605 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain STB20-1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1106090..1116605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIP50_RS05300 (FIP50_05305) csrA 1106677..1106862 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  FIP50_RS05330 (FIP50_05335) yqaB 1108320..1108886 (+) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  FIP50_RS05335 (FIP50_05340) yqaA 1108883..1109311 (+) 429 WP_001287454.1 YqaA family protein -
  FIP50_RS05340 (FIP50_05345) gshA 1109384..1110940 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  FIP50_RS05345 (FIP50_05350) luxS 1111090..1111605 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  FIP50_RS05350 (FIP50_05355) emrB 1111669..1113207 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  FIP50_RS05355 (FIP50_05360) emrA 1113224..1114396 (-) 1173 WP_001326681.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  FIP50_RS05360 (FIP50_05365) emrR 1114523..1115053 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  FIP50_RS05370 (FIP50_05375) ygaH 1115144..1115479 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  FIP50_RS05375 (FIP50_05380) ygaZ 1115469..1116206 (-) 738 WP_000445651.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=377409 FIP50_RS05345 WP_001130211.1 1111090..1111605(+) (luxS) [Escherichia coli strain STB20-1]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=377409 FIP50_RS05345 WP_001130211.1 1111090..1111605(+) (luxS) [Escherichia coli strain STB20-1]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731