Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   HPSA_RS05645 Genome accession   NC_017361
Coordinates   1201126..1202175 (+) Length   349 a.a.
NCBI ID   WP_000115441.1    Uniprot ID   -
Organism   Helicobacter pylori SouthAfrica7     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1196126..1207175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPSA_RS05625 (HPSA_05825) - 1196271..1197014 (+) 744 WP_014534851.1 carbonic anhydrase -
  HPSA_RS05630 (HPSA_05830) - 1197242..1198291 (-) 1050 WP_000446670.1 DUF874 family protein -
  HPSA_RS05635 (HPSA_05835) asd 1198709..1199749 (-) 1041 WP_000860880.1 aspartate-semialdehyde dehydrogenase -
  HPSA_RS05640 (HPSA_05840) hisS 1199736..1201064 (-) 1329 WP_000632477.1 histidine--tRNA ligase -
  HPSA_RS05645 (HPSA_05845) waaF 1201126..1202175 (+) 1050 WP_000115441.1 lipopolysaccharide heptosyltransferase II Regulator
  HPSA_RS05650 (HPSA_05850) - 1202309..1202527 (-) 219 WP_000744170.1 hypothetical protein -
  HPSA_RS05655 - 1202725..1203715 (+) 991 Protein_1098 aldo/keto reductase -
  HPSA_RS05660 (HPSA_05875) fusA 1204217..1206295 (-) 2079 WP_000101880.1 elongation factor G -
  HPSA_RS05665 (HPSA_05880) rpsG 1206307..1206774 (-) 468 WP_001254365.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39477.18 Da        Isoelectric Point: 9.7447

>NTDB_id=37729 HPSA_RS05645 WP_000115441.1 1201126..1202175(+) (waaF) [Helicobacter pylori SouthAfrica7]
MSVNAPKRMRILLRLPNWLGDGVMASPLFYTLKNHYPNAHFILVGPQITCELFKKDESIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAITTAPKEYHQVEKYCFLFSQFLKKELDQKNVLPL
KLAFDLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAALLEKGHEIYFFGAKEDTIVSEEILKSVKSLLKNPLLSH
NAYNLCGKTSIEELIQRIAILDLFITNDSGPMHAAASTKTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCAPCKKRVCP
LKNEKNHLCMKSITPLEVLQAAHILLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=37729 HPSA_RS05645 WP_000115441.1 1201126..1202175(+) (waaF) [Helicobacter pylori SouthAfrica7]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCCC
GCTTTTTTACACCCTTAAAAACCACTACCCTAACGCGCATTTTATCTTAGTGGGTCCACAAATCACTTGCGAACTTTTCA
AAAAAGATGAAAGCATAGAAGCCGTTTTCATAGATGACACCAAAAAATCCTTTTTTAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTCGCTCAATTTTTTCGTTCTTTGTTTCTCAGTCATGCGATAACGACTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAAAAAAAGAATTGGATCAAAAAAACGTTTTACCCTTA
AAACTGGCCTTTGATCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCCAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGCTTTGTTAGAAAAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACACTATCGTTTCTGAAGAGATTTTAAAATCCGTTAAAAGCTTATTGAAAAACCCCTTATTATCCCAC
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATACAACGCATCGCAATTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGCAGCCGCCAGCACGAAAACCCCCCTAATCGCTCTTTTTGGTCCCACTGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAACGATTGTGTTGAACCACCATTTAAGCTGTGCACCTTGCAAAAAACGAGTTTGCCCC
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCCTTCAAGCCGCTCACATTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.941

97.421

0.37

Multiple sequence alignment