Detailed information NTG0037724

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: HPSA_RS04530
• Genome accession: NC_017361
• Coordinates: 962161..963396 (-)
• Length: 411 a.a.
• NCBI ID: WP_000734976.1
• Uniprot ID: -
• Organism: Helicobacter pylori SouthAfrica7
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 957161..968396

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPSA_RS04490 (HPSA_04660)	-	957262..959007 (-)	1746	WP_001208188.1	type IV secretory system conjugative DNA transfer family protein	-
HPSA_RS04495 (HPSA_04665)	-	959008..959565 (-)	558	WP_001167790.1	hypothetical protein	-
HPSA_RS04500 (HPSA_04670)	-	959566..959856 (-)	291	WP_000159816.1	hypothetical protein	-
HPSA_RS04505 (HPSA_04675)	-	959853..960308 (-)	456	WP_000753653.1	hypothetical protein	-
HPSA_RS04510 (HPSA_04680)	-	960305..961246 (-)	942	WP_000625138.1	CpaF/VirB11 family protein	-
HPSA_RS04515 (HPSA_04685)	-	961246..961545 (-)	300	WP_000660142.1	hypothetical protein	-
HPSA_RS04520 (HPSA_04690)	-	961542..961805 (-)	264	WP_000578846.1	hypothetical protein	-
HPSA_RS04525 (HPSA_04695)	-	961795..962091 (-)	297	WP_000422438.1	hypothetical protein	-
HPSA_RS04530 (HPSA_04700)	comB10	962161..963396 (-)	1236	WP_000734976.1	DNA type IV secretion system protein ComB10	Machinery gene
HPSA_RS04535 (HPSA_04705)	-	963393..964934 (-)	1542	WP_000714778.1	TrbG/VirB9 family P-type conjugative transfer protein	-
HPSA_RS04540 (HPSA_04710)	-	964934..965920 (-)	987	WP_000416478.1	type IV secretion system protein	-
HPSA_RS04545 (HPSA_04720)	-	966050..967984 (-)	1935	WP_033620115.1	type IA DNA topoisomerase	-

Sequence

Protein

• Length: 411 a.a.
• Molecular weight: 46575.70 Da
• Isoelectric Point: 10.0578

>NTDB_id=37724 HPSA_RS04530 WP_000734976.1 962161..963396(-) (comB10) [Helicobacter pylori SouthAfrica7]
MKKLLLLLEHKIIKIGLIIVIVLAGFFLFYEQEIKEKAVNVSQGKFPTSSYLFQAYEGIKNKIDTINEVKPNDETKSVNE
NIEKTQKDLDDFNALVQKLPNFPKDFNKTLIKPQSPSFNYNTANEEEKSRLMILASRISSQKEMQPPTSIKNSVSHTKSK
EKRELEKEYGSSGFKNFKRKNVASSENKLLRTITADRMIPAILITPISSEIGGSKIVAQVESDIYATMGRAVLIPKGSRA
IGYYNSNNKIGEYRLEIAWNRIITPQGVNIILSDAKGADVKGYNGMIGTLHNKYWERYGIPLSLSTLSNGLLIGLTSGLT
EAMKNKRGGFNQNYFGDYMMMQMTRQTGISLNNIIAQIMREQIRIKPIITIREGSHIFISPNTDIWFPIPKNNEVLAKFF
NEEKEQNNDTK

Nucleotide

• Length: 1236 bp

>NTDB_id=37724 HPSA_RS04530 WP_000734976.1 962161..963396(-) (comB10) [Helicobacter pylori SouthAfrica7]
ATGAAAAAACTTCTTTTACTTTTAGAGCATAAGATCATAAAAATTGGCTTAATTATTGTGATTGTATTAGCTGGTTTTTT
TCTTTTTTACGAACAAGAAATCAAAGAAAAAGCTGTTAATGTTTCTCAAGGCAAATTCCCTACTTCATCTTATTTGTTTC
AAGCTTACGAAGGCATTAAGAATAAAATAGATACTATCAATGAAGTGAAACCAAACGATGAAACTAAAAGCGTTAATGAG
AATATAGAAAAAACACAAAAAGATTTAGATGATTTTAATGCACTAGTGCAAAAATTACCAAATTTTCCCAAGGATTTTAA
TAAAACACTTATTAAACCACAAAGTCCATCCTTCAACTACAATACCGCTAATGAAGAAGAAAAATCCCGTCTGATGATTT
TAGCGTCTCGTATTAGCAGTCAAAAAGAAATGCAACCTCCCACCTCCATAAAAAATAGCGTTTCTCACACAAAATCCAAA
GAAAAACGAGAACTTGAAAAAGAATACGGATCTAGCGGGTTTAAAAATTTTAAAAGAAAAAATGTAGCGAGTAGTGAAAA
CAAACTTTTAAGAACGATTACAGCTGACAGGATGATCCCAGCCATTCTGATCACTCCTATTAGTAGTGAAATAGGGGGGA
GTAAGATAGTCGCTCAGGTGGAGAGCGATATATACGCAACGATGGGTAGAGCGGTTTTAATCCCTAAAGGGAGTAGAGCC
ATAGGTTATTACAACTCCAATAACAAAATAGGAGAATACCGATTAGAAATTGCTTGGAATAGGATAATCACGCCTCAAGG
GGTCAATATCATACTAAGCGATGCTAAGGGAGCTGATGTCAAGGGTTATAATGGCATGATAGGCACACTCCATAACAAAT
ATTGGGAACGCTATGGTATTCCTTTATCCTTAAGCACCTTGTCAAATGGGCTACTCATAGGTCTTACTAGCGGTCTTACC
GAAGCGATGAAAAACAAAAGGGGTGGTTTTAACCAAAACTATTTTGGAGATTACATGATGATGCAAATGACAAGGCAAAC
TGGTATCAGCCTAAATAATATTATTGCTCAAATCATGCGAGAGCAAATAAGGATTAAGCCCATTATCACTATTAGAGAAG
GAAGCCATATTTTTATTAGTCCTAATACGGATATTTGGTTTCCTATCCCTAAAAACAATGAAGTCTTAGCGAAATTCTTT
AATGAAGAAAAGGAGCAAAACAATGATACAAAATAG

Domains

Predicted by InterProScan.

• Bacterial conjugation TrbI-like protein (TrbI) (192-387)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	46.096	96.594	0.445