Detailed information NTG0377204

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HBA21_RS06795
• Genome accession: NZ_CP050148
• Coordinates: 1449860..1450864 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain AA43
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1444860..1455864

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HBA21_RS06765 (HBA21_06775)	fghA	1444952..1445803 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
HBA21_RS06770 (HBA21_06780)	ispF	1445874..1446347 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HBA21_RS06775 (HBA21_06785)	truD	1446344..1447411 (+)	1068	WP_004345456.1	tRNA pseudouridine(13) synthase TruD	-
HBA21_RS06780 (HBA21_06790)	surE	1447399..1448148 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
HBA21_RS06785 (HBA21_06795)	-	1448181..1448816 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
HBA21_RS06790 (HBA21_06800)	-	1448862..1449755 (+)	894	WP_003143263.1	peptidoglycan DD-metalloendopeptidase family protein	-
HBA21_RS06795 (HBA21_06805)	rpoS	1449860..1450864 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
HBA21_RS06800 (HBA21_06810)	fdxA	1451291..1451614 (-)	324	WP_003119354.1	ferredoxin FdxA	-
HBA21_RS06805 (HBA21_06815)	mutS	1451681..1454248 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
HBA21_RS06810 (HBA21_06820)	-	1454374..1455381 (-)	1008	WP_003092265.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=377204 HBA21_RS06795 WP_003113871.1 1449860..1450864(+) (rpoS) [Pseudomonas aeruginosa strain AA43]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=377204 HBA21_RS06795 WP_003113871.1 1449860..1450864(+) (rpoS) [Pseudomonas aeruginosa strain AA43]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATTCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653