Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HPSA_RS03665 Genome accession   NC_017361
Coordinates   780237..781757 (-) Length   506 a.a.
NCBI ID   WP_000611102.1    Uniprot ID   -
Organism   Helicobacter pylori SouthAfrica7     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 775237..786757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPSA_RS03650 (HPSA_03785) hofF 775411..776910 (+) 1500 WP_001108226.1 outer membrane beta-barrel protein HofF -
  HPSA_RS03655 - 777447..778107 (-) 661 Protein_720 restriction endonuclease subunit S -
  HPSA_RS03660 (HPSA_03805) - 778153..780213 (-) 2061 WP_001158794.1 heavy metal translocating P-type ATPase -
  HPSA_RS03665 (HPSA_03810) comM 780237..781757 (-) 1521 WP_000611102.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HPSA_RS03670 (HPSA_03815) def 781763..782287 (-) 525 WP_001185838.1 peptide deformylase -
  HPSA_RS03675 (HPSA_03820) clpP 782292..782879 (-) 588 WP_000540573.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  HPSA_RS03680 (HPSA_03825) tig 782899..784254 (-) 1356 WP_001047839.1 trigger factor -
  HPSA_RS03685 (HPSA_03830) - 784367..785203 (-) 837 WP_001080913.1 outer membrane protein -
  HPSA_RS03690 (HPSA_03835) hpaA 785225..786007 (-) 783 WP_000739261.1 flagellar sheath lipoprotein HpaA -
  HPSA_RS03695 (HPSA_03840) moaC 786128..786604 (-) 477 WP_001131508.1 cyclic pyranopterin monophosphate synthase MoaC -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57258.28 Da        Isoelectric Point: 8.3957

>NTDB_id=37719 HPSA_RS03665 WP_000611102.1 780237..781757(-) (comM) [Helicobacter pylori SouthAfrica7]
MINTIFCTTMQKGVAEIVAVEATFTRALPAFVISGLANNSIQEAKQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELSAKEWFAFGELGLDGKIKPNSNIFPMLLDIAIKRPHAKVIAPKANEELFSLIPNLQCFFVEHFKE
ALEILQNPEIKAHTHIKNLPFETIEIHHKEYYFSDTYALDFKEVKGQAIAKEAALIASAGFHNLLLEGSPGCGKSMIVNR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLKEPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVISRVHSKIEYETSFLFVGAQNPCLCGNLLSTTKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE
GSYKDAPSHSWTSKEMHQLVLLAFKQQKLRKQSVFNGKLNEEQIERFCPLNFEAQKLLEQAAERFNLSMRSINKVKKVAR
TIADLNACENIEKSHMLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=37719 HPSA_RS03665 WP_000611102.1 780237..781757(-) (comM) [Helicobacter pylori SouthAfrica7]
ATGATTAACACGATATTTTGCACGACCATGCAAAAGGGGGTGGCAGAAATCGTGGCTGTGGAAGCGACTTTCACAAGGGC
TTTACCGGCGTTTGTGATTTCAGGCTTAGCTAATAACTCTATCCAAGAAGCCAAGCAGCGAGTCCAATCAGCCTTACAAA
ATAACGATTTCACTTTCCCGCCTTTAAAAATCACCATCAACCTTTCGCCTTCAGATTTGCCTAAATCCGGGAGTCATTTT
GACTTACCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAATTAAGCGCTAAAGAGTGGTTTGCTTTTGGAGAGTTAGG
GCTTGATGGTAAGATCAAACCCAATTCCAATATTTTCCCCATGCTTTTAGACATTGCCATTAAACGCCCCCATGCAAAAG
TCATCGCGCCTAAAGCCAATGAAGAGCTTTTTTCGCTCATTCCTAATTTGCAATGCTTTTTTGTGGAGCATTTTAAAGAA
GCCTTAGAAATCTTGCAAAACCCTGAAATCAAAGCACACACCCACATTAAAAACCTCCCTTTTGAAACGATAGAAATCCA
CCACAAAGAGTATTATTTTTCAGACACCTACGCTTTAGATTTTAAAGAAGTTAAGGGGCAAGCTATCGCTAAAGAAGCCG
CTTTGATCGCTAGCGCTGGGTTTCATAACCTGCTTTTAGAGGGAAGTCCAGGGTGCGGTAAAAGCATGATCGTTAATCGC
ATGCGTTATATTTTACCTCCCTTAAGTTTGAATGAAATCCTAGAAGCCACAAAATTACGCATTTTAAGCGAGCAAGACAG
CGCTTATTACCCTTTAAGAAGCTTTAGAAACCCGCACCAAAGCGCTTCAAAATCCAGCATTTTAGGCTCAAGCTCTTTAA
AAGAGCCAAAACCTGGCGAAATCGCATTAGCGCATAACGGCATGCTTTTTTTTGATGAATTGCCCCATTTTAAAAAGGAT
ATTTTGGAAGCCTTAAGAGAGCCTTTAGAAAACAATAAATTAGTGATCTCACGAGTGCATAGTAAGATTGAATACGAAAC
CTCTTTTTTATTTGTAGGGGCTCAAAACCCTTGCTTGTGCGGGAATTTACTCAGCACCACTAAAGCATGCCGTTGTCAAG
ATAGAGAAATCACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTGGATAGGATTGATTTGTTTGTGCAAATGGAAGAG
GGGAGCTATAAAGACGCGCCATCGCACTCTTGGACTTCAAAAGAAATGCACCAATTGGTGTTATTAGCTTTCAAACAGCA
AAAATTAAGAAAACAAAGCGTTTTTAATGGTAAGCTTAATGAAGAGCAGATCGAACGATTTTGCCCTTTAAATTTTGAAG
CGCAAAAGTTGTTGGAGCAGGCGGCTGAAAGGTTTAATCTGTCCATGCGATCTATCAATAAAGTCAAAAAGGTCGCTAGG
ACGATTGCGGATTTAAACGCTTGCGAGAATATAGAAAAATCTCACATGCTTAAAGCGTTGAGTTTTAGAAAAATTTCTTA
A

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

93.676

100

0.937
  comM Acinetobacter baylyi ADP1

35.938

100

0.364

Multiple sequence alignment