Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FOZ74_RS07960 Genome accession   NZ_CP042344
Coordinates   1635372..1636754 (+) Length   460 a.a.
NCBI ID   WP_146912560.1    Uniprot ID   A0A5B8RYR2
Organism   Comamonas flocculans strain NLF-7-7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1630372..1641754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOZ74_RS07940 (FOZ74_07940) - 1631257..1632135 (-) 879 WP_146912556.1 DMT family transporter -
  FOZ74_RS07945 (FOZ74_07945) lplT 1632185..1633447 (-) 1263 WP_146912557.1 lysophospholipid transporter LplT -
  FOZ74_RS07950 (FOZ74_07950) alr 1633593..1634690 (+) 1098 WP_146912558.1 alanine racemase -
  FOZ74_RS07955 (FOZ74_07955) - 1634711..1635238 (+) 528 WP_146912559.1 hypothetical protein -
  FOZ74_RS07960 (FOZ74_07960) radA 1635372..1636754 (+) 1383 WP_146912560.1 DNA repair protein RadA Machinery gene
  FOZ74_RS07965 (FOZ74_07965) - 1636758..1637171 (+) 414 WP_146912561.1 glycerate kinase -
  FOZ74_RS07970 (FOZ74_07970) - 1637211..1638149 (+) 939 WP_146912562.1 branched-chain amino acid transaminase -
  FOZ74_RS07975 (FOZ74_07975) - 1638155..1638361 (+) 207 WP_146912563.1 zinc-finger domain-containing protein -
  FOZ74_RS07980 (FOZ74_07980) - 1638411..1639679 (+) 1269 WP_146912564.1 O-antigen ligase family protein -
  FOZ74_RS07985 (FOZ74_07985) - 1639717..1640814 (+) 1098 WP_255437823.1 glycosyltransferase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 47593.03 Da        Isoelectric Point: 7.6501

>NTDB_id=377188 FOZ74_RS07960 WP_146912560.1 1635372..1636754(+) (radA) [Comamonas flocculans strain NLF-7-7]
MAKEKTLYTCNECGASSPRWLGKCPGCGAWNTLVETAAEAAGAGKNRLGGASYAGLAPAQQVVPLSSIEATEVARTATGI
AELDRVLGGGIVEGGVALIGGDPGIGKSTLLLQALDALQRLGLPVLYVSGEESGAQVALRARRLGLAASGVQVLAEIQLE
KILATVDAVQPAVCVIDSIQTMYSDQLASAPGSVAQVRECAAHLTRLAKASGIAVVLVGHVTKEGAIAGPRVLEHMVDTV
LYFEGDTHSSFRLVRAIKNRFGAVNEIGVFAMTEHGLKGVSNPSAIFLSQHSEPVPGSCVLVTLEGTRPLLVEIQALVDG
GGPSPRRLSVGLDRDRLAMLLAVLHRHAGVACFDQDVFVNAVGGVRIGEPAADLAVLLAITSSLRAKPLPKGFFAFGEVG
LAGEVRPAPRGQERLREAAKLGFTVAVVPKANAPKKPIAGLSIHAVDRVEQALDAVRTLA

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=377188 FOZ74_RS07960 WP_146912560.1 1635372..1636754(+) (radA) [Comamonas flocculans strain NLF-7-7]
ATGGCCAAGGAAAAGACCCTCTACACCTGCAATGAGTGCGGCGCCAGCAGCCCGCGCTGGCTGGGCAAATGCCCCGGCTG
CGGCGCCTGGAACACGCTGGTGGAAACGGCCGCCGAGGCTGCCGGCGCGGGCAAGAACCGCCTGGGCGGCGCGTCGTACG
CGGGCCTGGCGCCGGCGCAGCAGGTCGTGCCGCTGTCCAGCATCGAGGCGACCGAAGTCGCGCGCACGGCCACCGGCATC
GCCGAGCTGGACCGGGTGCTGGGCGGCGGCATCGTCGAGGGCGGCGTGGCGCTGATCGGGGGCGATCCGGGCATAGGCAA
GTCCACGCTGCTGCTGCAGGCGCTCGACGCGCTGCAGCGCCTGGGCCTGCCGGTGCTCTACGTGAGCGGCGAGGAAAGCG
GCGCCCAGGTGGCGCTGCGCGCGCGCCGCCTGGGCCTGGCGGCCAGCGGCGTGCAGGTGCTGGCCGAAATCCAGCTGGAA
AAAATCCTCGCCACCGTCGATGCGGTGCAGCCCGCCGTCTGCGTGATCGACTCCATCCAGACGATGTATTCGGACCAGCT
CGCCAGCGCCCCCGGCAGCGTTGCCCAAGTGCGCGAATGCGCGGCCCACCTCACGCGCCTGGCCAAGGCCAGCGGCATCG
CGGTGGTGCTGGTCGGCCACGTCACCAAGGAAGGCGCCATCGCCGGCCCGCGCGTGCTCGAGCACATGGTGGACACGGTG
CTGTACTTCGAGGGCGACACGCATTCGAGCTTTCGTCTGGTGCGCGCGATCAAGAACCGCTTTGGCGCGGTGAACGAGAT
CGGCGTCTTCGCCATGACCGAACACGGCCTCAAGGGCGTATCCAACCCGAGCGCAATTTTCTTGAGCCAGCACAGCGAAC
CCGTGCCCGGCTCCTGCGTGCTCGTCACGCTGGAAGGCACGCGCCCGCTGCTGGTGGAAATCCAGGCCCTGGTCGATGGC
GGTGGCCCCAGTCCGCGGCGGTTGTCCGTCGGTCTGGACCGCGACCGCCTGGCCATGCTGCTGGCCGTGCTGCATCGGCA
CGCGGGCGTGGCCTGCTTTGACCAGGACGTGTTCGTCAACGCCGTGGGCGGCGTGCGCATAGGCGAGCCGGCGGCCGACC
TGGCGGTGCTGCTGGCCATCACCTCCAGCCTGCGCGCCAAGCCCCTGCCCAAGGGTTTCTTCGCCTTTGGCGAGGTGGGC
CTGGCCGGCGAGGTGCGACCGGCCCCGCGCGGGCAGGAGCGGCTCAGGGAGGCCGCCAAGCTCGGCTTCACCGTCGCCGT
CGTGCCCAAGGCCAATGCACCCAAGAAACCCATTGCGGGCCTGAGCATCCACGCCGTGGACCGCGTGGAGCAGGCCCTGG
ACGCGGTGCGCACCCTCGCCTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(67-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B8RYR2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50

99.13

0.496
  radA Streptococcus mitis NCTC 12261

46.507

99.565

0.463
  radA Streptococcus pneumoniae D39

48.276

94.565

0.457
  radA Streptococcus pneumoniae R6

48.276

94.565

0.457
  radA Streptococcus pneumoniae TIGR4

48.276

94.565

0.457
  radA Streptococcus pneumoniae Rx1

48.276

94.565

0.457
  radA Streptococcus mitis SK321

48.276

94.565

0.457

Multiple sequence alignment