Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   FOZ74_RS04555 Genome accession   NZ_CP042344
Coordinates   917443..917847 (-) Length   134 a.a.
NCBI ID   WP_146911960.1    Uniprot ID   A0A5B8RUL5
Organism   Comamonas flocculans strain NLF-7-7     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 912443..922847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOZ74_RS04540 (FOZ74_04540) - 914275..916494 (-) 2220 WP_146911957.1 methyl-accepting chemotaxis protein -
  FOZ74_RS04545 (FOZ74_04545) - 916528..917058 (-) 531 WP_146911958.1 chemotaxis protein CheW -
  FOZ74_RS04550 (FOZ74_04550) - 917078..917443 (-) 366 WP_146911959.1 response regulator -
  FOZ74_RS04555 (FOZ74_04555) pilG 917443..917847 (-) 405 WP_146911960.1 response regulator Regulator
  FOZ74_RS04560 (FOZ74_04560) hemL 918059..919372 (+) 1314 WP_146911961.1 glutamate-1-semialdehyde 2,1-aminomutase -
  FOZ74_RS04565 (FOZ74_04565) - 919364..920251 (-) 888 WP_146911962.1 EamA family transporter -
  FOZ74_RS04570 (FOZ74_04570) purH 920286..921890 (-) 1605 WP_146911963.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase -
  FOZ74_RS04575 (FOZ74_04575) - 921973..922212 (-) 240 WP_146911964.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 14805.06 Da        Isoelectric Point: 7.8204

>NTDB_id=377179 FOZ74_RS04555 WP_146911960.1 917443..917847(-) (pilG) [Comamonas flocculans strain NLF-7-7]
MATATTGPTIKVLVVDDSNTIRRSAEIFLKQGGHEVLLADDGFDALSKVNDYQPQLIFCDILMPKLDGYQTVAIIKRNPR
FADTPVVMLSSKDGVFDKARGRMVGCQDYLTKPFTKDQLLQAVQQFGRVQPGAQ

Nucleotide


Download         Length: 405 bp        

>NTDB_id=377179 FOZ74_RS04555 WP_146911960.1 917443..917847(-) (pilG) [Comamonas flocculans strain NLF-7-7]
TTGGCGACAGCGACTACCGGTCCCACGATCAAGGTGCTCGTGGTGGACGACAGCAACACGATCCGGCGCAGCGCCGAGAT
ATTCCTCAAACAGGGTGGTCACGAGGTCTTGCTTGCCGACGACGGCTTTGACGCGCTGTCCAAGGTCAACGACTACCAGC
CCCAACTCATCTTTTGCGACATCCTGATGCCCAAGCTCGATGGCTACCAGACCGTGGCCATCATCAAGCGCAATCCGCGT
TTTGCCGACACCCCGGTGGTCATGCTGTCCTCCAAGGACGGTGTCTTCGACAAGGCGCGCGGGCGCATGGTGGGCTGCCA
GGACTACCTCACCAAACCCTTTACCAAGGATCAGTTGCTGCAGGCGGTGCAGCAATTTGGCCGTGTGCAACCAGGAGCTC
AGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(12-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B8RUL5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

56.41

87.313

0.493

Multiple sequence alignment