Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   FRE64_RS18105 Genome accession   NZ_CP042326
Coordinates   2582169..2582324 (-) Length   51 a.a.
NCBI ID   WP_222597823.1    Uniprot ID   -
Organism   Euhalothece natronophila Z-M001     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2577169..2587324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FRE64_RS17530 - 2577426..2577569 (-) 144 WP_186709077.1 hypothetical protein -
  FRE64_RS12615 (FRE64_12615) - 2577787..2578029 (-) 243 WP_222597820.1 DUF4351 domain-containing protein -
  FRE64_RS12620 (FRE64_12620) - 2578205..2578906 (-) 702 WP_146297358.1 Uma2 family endonuclease -
  FRE64_RS12625 (FRE64_12625) - 2579165..2579494 (-) 330 WP_146296565.1 DUF4351 domain-containing protein -
  FRE64_RS12630 (FRE64_12630) - 2579494..2579739 (-) 246 WP_146296566.1 hypothetical protein -
  FRE64_RS12635 (FRE64_12635) - 2579904..2580455 (-) 552 WP_222597821.1 ABC transporter ATP-binding protein -
  FRE64_RS17745 - 2580659..2580808 (-) 150 WP_222597822.1 hypothetical protein -
  FRE64_RS12640 (FRE64_12640) - 2580849..2581427 (+) 579 WP_146296568.1 Uma2 family endonuclease -
  FRE64_RS12645 (FRE64_12645) - 2581444..2581854 (-) 411 WP_146296569.1 type II toxin-antitoxin system VapC family toxin -
  FRE64_RS12650 (FRE64_12650) - 2581857..2582078 (-) 222 WP_146296570.1 hypothetical protein -
  FRE64_RS18105 rcrQ 2582169..2582324 (-) 156 WP_222597823.1 hypothetical protein Regulator
  FRE64_RS18110 - 2582355..2582570 (-) 216 WP_222597824.1 ATP-binding cassette domain-containing protein -
  FRE64_RS12660 (FRE64_12660) - 2582633..2584504 (-) 1872 WP_146296571.1 ABC transporter ATP-binding protein -
  FRE64_RS12665 (FRE64_12665) - 2584735..2585196 (-) 462 WP_146296572.1 DUF3368 domain-containing protein -
  FRE64_RS12670 (FRE64_12670) - 2585183..2585410 (-) 228 WP_146296573.1 UPF0175 family protein -
  FRE64_RS12675 (FRE64_12675) - 2585570..2586304 (-) 735 WP_146296574.1 Uma2 family endonuclease -
  FRE64_RS12680 (FRE64_12680) - 2586340..2586711 (-) 372 WP_315862649.1 hypothetical protein -
  FRE64_RS12685 (FRE64_12685) - 2586753..2587184 (-) 432 WP_146296575.1 DUF29 family protein -

Sequence

Protein


Download         Length: 51 a.a.        Molecular weight: 5788.63 Da        Isoelectric Point: 5.5144

>NTDB_id=377106 FRE64_RS18105 WP_222597823.1 2582169..2582324(-) (rcrQ) [Euhalothece natronophila Z-M001]
MDEATSALDSHSEHLVKEALKEFQRDRTVLVIAHRLSTIINADQIIVLEKC

Nucleotide


Download         Length: 156 bp        

>NTDB_id=377106 FRE64_RS18105 WP_222597823.1 2582169..2582324(-) (rcrQ) [Euhalothece natronophila Z-M001]
TTGGATGAAGCCACCAGCGCCTTAGACAGTCATTCTGAGCATTTAGTAAAAGAGGCGTTAAAGGAATTTCAGCGCGATCG
GACGGTTCTAGTGATTGCTCATCGGTTATCAACGATTATCAATGCGGATCAGATTATTGTGTTAGAGAAGTGCTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

52.083

94.118

0.49
  amiF Streptococcus thermophilus LMD-9

42.308

100

0.431
  amiF Streptococcus thermophilus LMG 18311

42.308

100

0.431
  amiF Streptococcus salivarius strain HSISS4

42.308

100

0.431
  comA Streptococcus gordonii str. Challis substr. CH1

38

98.039

0.373

Multiple sequence alignment