Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   HBA20_RS01910 Genome accession   NZ_CP050147
Coordinates   413084..414445 (+) Length   453 a.a.
NCBI ID   WP_024007763.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain A5803     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 408084..419445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA20_RS01890 (HBA20_01890) - 408921..409487 (-) 567 WP_058154973.1 hypothetical protein -
  HBA20_RS01895 (HBA20_01895) rsmD 409490..410086 (-) 597 WP_023100130.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  HBA20_RS01900 (HBA20_01900) - 410086..411573 (-) 1488 WP_033953542.1 pitrilysin family protein -
  HBA20_RS01905 (HBA20_01905) - 411566..412963 (-) 1398 WP_079380840.1 pitrilysin family protein -
  HBA20_RS01910 (HBA20_01910) pilA 413084..414445 (+) 1362 WP_024007763.1 signal recognition particle-docking protein FtsY Machinery gene
  HBA20_RS01915 (HBA20_01915) ftsE 414442..415113 (+) 672 WP_003084505.1 cell division ATP-binding protein FtsE -
  HBA20_RS01920 (HBA20_01920) ftsX 415113..416120 (+) 1008 WP_003084508.1 permease-like cell division protein FtsX -
  HBA20_RS01925 (HBA20_01925) rpoH 416234..417088 (+) 855 WP_003084510.1 RNA polymerase sigma factor RpoH -
  HBA20_RS01930 (HBA20_01930) - 417153..417758 (+) 606 WP_003084511.1 hypothetical protein -
  HBA20_RS01935 (HBA20_01935) mtgA 417763..418494 (-) 732 WP_003084512.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  HBA20_RS01940 (HBA20_01940) - 418531..418908 (+) 378 WP_003084513.1 DUF423 domain-containing protein -
  HBA20_RS01945 (HBA20_01945) thiS 419011..419211 (+) 201 WP_003084514.1 sulfur carrier protein ThiS -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48097.51 Da        Isoelectric Point: 4.5795

>NTDB_id=377084 HBA20_RS01910 WP_024007763.1 413084..414445(+) (pilA) [Pseudomonas aeruginosa strain A5803]
MFGSNDDKKAPQGGEKKGLFGWWRKKPQAGEQPADQPVEPVSETAAAEQRAPADDVAQSLTEQPGRQQPSAAEPAEPPAP
APVAEAPLAGDEPASAEEHSPRSEAPVAQPEPILAAEPEPEPEPEPEPVAPLAAAPAVSEPATRPGFFARLRQGLSKTSA
SIGEGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNLTKRVARKELADSGALYKALQEELASLLRPVEQPLQ
VDVAREPYVILVVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFD
AVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQAKQFNLAVELTGLALT
KLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQALFAERENA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=377084 HBA20_RS01910 WP_024007763.1 413084..414445(+) (pilA) [Pseudomonas aeruginosa strain A5803]
ATGTTTGGTTCCAACGACGACAAGAAGGCCCCGCAGGGCGGGGAAAAGAAAGGTCTGTTCGGCTGGTGGCGGAAAAAGCC
GCAAGCCGGCGAGCAGCCTGCCGATCAGCCTGTCGAGCCGGTCTCCGAGACAGCGGCCGCCGAGCAGCGCGCGCCCGCCG
ATGACGTAGCGCAATCCCTGACAGAACAGCCAGGTCGGCAGCAGCCCTCCGCTGCCGAGCCGGCCGAGCCGCCGGCGCCG
GCGCCGGTTGCCGAAGCGCCGCTCGCCGGTGACGAGCCAGCGTCGGCCGAGGAGCATTCGCCCCGGTCCGAGGCGCCCGT
CGCGCAACCCGAGCCTATCCTGGCTGCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGTTGCGCCGCTGGCCG
CCGCTCCGGCAGTCAGCGAGCCGGCGACCAGGCCGGGCTTCTTCGCCCGCCTCCGGCAGGGACTGTCCAAGACCAGCGCC
AGCATCGGCGAAGGCATGGCCAGCCTGTTCCTCGGCCGCAAGGAAATCGACGACGACCTGCTCGACGACATCGAGACGCG
CCTGCTGACCGCCGACGTCGGCGTCGAGGCCACCACCCTGATCGTGCAGAACCTGACCAAGCGCGTGGCGCGCAAGGAGC
TGGCCGACAGCGGCGCGCTGTACAAGGCGCTGCAGGAAGAGCTGGCCAGCCTGCTGCGCCCGGTGGAGCAGCCGTTGCAG
GTCGACGTCGCGCGCGAGCCCTATGTGATCCTGGTGGTCGGGGTGAACGGCGTGGGCAAGACCACCACCATCGGCAAGCT
GGCGAAGAAGCTGCAACTCGAGGGCAAGAAGGTCATGCTGGCCGCCGGCGACACCTTCCGCGCCGCCGCCGTGGAGCAGT
TGCAGGTCTGGGGCGAGCGCAACCGCATCCCGGTGATCGCCCAGCACACCGGCGCCGACTCCGCCTCGGTGATCTTCGAC
GCGGTGCAGGCCGCCAAGGCCCGCGGCATCGACGTGCTGATCGCCGATACCGCCGGACGCCTGCATACCAAGGACAACCT
GATGGAGGAGCTGAAGAAGGTGCGCCGGGTGATCGGCAAGCTGGACGAGACGGCGCCCCATGAGGTCCTGCTGGTGCTCG
ACGCCGGCACCGGGCAGAACGCCATCAACCAGGCCAAGCAGTTCAACCTCGCGGTGGAGCTGACCGGCCTGGCCCTGACC
AAACTGGACGGCACCGCCAAGGGCGGGGTGATCTTCGCCCTGGCCAAGCAGTTCGGCCTGCCGATCCGCTATATCGGTGT
CGGCGAGGGGATCGACGATCTCCGTACCTTCGAGGCCGACGCCTTCGTCCAGGCACTCTTCGCAGAGCGGGAGAACGCAT
GA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(248-447)

SRP54-type protein, helical bundle domain (SRP54_N)

(163-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

47.586

96.026

0.457