Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   HBA47_RS06970 Genome accession   NZ_CP050136
Coordinates   1316134..1317855 (-) Length   573 a.a.
NCBI ID   WP_019389285.1    Uniprot ID   -
Organism   Kingella kingae strain ATCC 23332     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1311134..1322855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA47_RS06965 (HBA47_06995) purM 1314861..1315898 (-) 1038 WP_019389284.1 phosphoribosylformylglycinamidine cyclo-ligase -
  HBA47_RS06970 (HBA47_07000) recD 1316134..1317855 (-) 1722 WP_019389285.1 exodeoxyribonuclease V subunit alpha Machinery gene
  HBA47_RS06975 (HBA47_07005) - 1317852..1318649 (-) 798 WP_003786450.1 polyamine aminopropyltransferase -
  HBA47_RS06980 (HBA47_07010) - 1318788..1319570 (-) 783 WP_019389286.1 NUDIX domain-containing protein -
  HBA47_RS06985 (HBA47_07015) - 1319656..1320552 (+) 897 WP_019389287.1 recombination-associated protein RdgC -
  HBA47_RS06990 (HBA47_07020) - 1320585..1321031 (+) 447 WP_238373596.1 hypothetical protein -
  HBA47_RS06995 (HBA47_07025) dcd 1321041..1321607 (+) 567 WP_019389289.1 dCTP deaminase -
  HBA47_RS07000 (HBA47_07030) recR 1321765..1322388 (+) 624 WP_019389290.1 recombination mediator RecR Machinery gene

Sequence

Protein


Download         Length: 573 a.a.        Molecular weight: 62666.92 Da        Isoelectric Point: 6.3548

>NTDB_id=377058 HBA47_RS06970 WP_019389285.1 1316134..1317855(-) (recD) [Kingella kingae strain ATCC 23332]
MSLQDIHTETELDLSPAAQAVCELFARIAPDVADSVAPFVQRLFAASANGDTFVYVSHSDVALLQQATPLVGNDDRSPLV
LDGKRLFLAKSWHLERELAAQIQRLSQQECRLPAPDIITPKLQTWFADAGSHDQQAACTLALIKPFVLISGGPGTGKTTT
VAKLLALLCDEATLPRIALVAPTGKAAARLSQALRGALSCMTDLSPAIAAHLNALDGQTAHRLLGIKPPTLNAEYDSNNP
LVLDMVLIDEASMLDNYLFYQLLCALSDTCRVVLLGDADQLPSVGAGAILTALSTQSQVQAATLAQLQRYLPARSDWRTV
AEQFARLTLSHRFDSQSGIGQFAAAVRTGSLHHRDDVAQLFTQFPQALSQQHGSAKQLAEQMWQQHHDYWQAIDAGDVQA
AFAWQNRLIALTALRFDAQQINQAYRQIAQQHQRVSSSDTWFAGQMLLITRNAPAQKLYNGDVGIVMQPAQSKGLVACFP
DENAGYRTVPLSRLPEHESAFAMTVHKSQGSEYDSVWYFAPSYSTASRALLYTAVTRAKQQFVYWGDLDSAVQASQHHVP
RQTGLANFLQEDR

Nucleotide


Download         Length: 1722 bp        

>NTDB_id=377058 HBA47_RS06970 WP_019389285.1 1316134..1317855(-) (recD) [Kingella kingae strain ATCC 23332]
ATGAGTCTGCAAGATATCCATACCGAAACCGAATTAGACCTGTCGCCAGCCGCGCAAGCCGTGTGTGAACTGTTTGCACG
CATTGCGCCCGATGTTGCCGACAGCGTTGCGCCGTTTGTGCAACGATTGTTTGCCGCCAGCGCAAATGGCGATACGTTTG
TTTACGTTAGCCACAGCGATGTCGCTCTATTGCAGCAAGCCACGCCATTGGTGGGCAATGATGACCGCAGTCCGCTGGTG
TTGGACGGCAAACGCTTGTTTTTGGCAAAATCGTGGCATTTGGAACGCGAACTTGCCGCGCAAATCCAACGCCTATCGCA
ACAAGAATGCAGGCTGCCTGCGCCCGACATCATCACGCCCAAATTGCAAACGTGGTTTGCCGATGCAGGCAGCCACGACC
AGCAAGCAGCCTGCACTTTGGCGTTGATTAAACCATTTGTGTTGATTAGCGGTGGGCCGGGCACAGGCAAAACCACCACC
GTTGCCAAATTGCTGGCTTTGCTGTGCGATGAAGCCACCTTACCGCGCATTGCATTGGTTGCACCCACAGGCAAAGCCGC
AGCACGTTTATCACAAGCCCTGCGTGGCGCATTGTCGTGCATGACCGATTTATCGCCAGCCATTGCCGCGCATTTGAATG
CTTTGGACGGACAAACCGCGCACCGTTTATTGGGGATTAAACCGCCCACGCTGAACGCAGAATACGACAGCAACAACCCA
CTTGTGTTGGATATGGTGTTGATTGACGAAGCGTCTATGTTGGATAACTATTTGTTTTATCAATTGCTTTGTGCTTTGTC
CGATACTTGCCGCGTGGTGTTGCTGGGCGATGCCGACCAACTGCCATCAGTGGGTGCAGGTGCGATTTTGACCGCGCTGT
CCACGCAATCACAAGTGCAGGCTGCTACGTTGGCGCAACTGCAACGCTACTTGCCCGCACGCAGCGATTGGCGCACCGTT
GCCGAGCAATTCGCGCGTTTAACATTAAGCCATCGTTTTGATAGCCAAAGCGGCATTGGACAATTTGCCGCCGCCGTTCG
CACAGGCAGCCTGCACCATCGTGATGACGTAGCGCAACTGTTTACCCAGTTTCCGCAAGCCTTGTCGCAGCAACACGGTT
CAGCTAAACAACTTGCCGAGCAAATGTGGCAACAACATCACGACTATTGGCAAGCGATAGACGCTGGCGATGTGCAGGCT
GCTTTTGCGTGGCAAAACCGCTTAATCGCGCTAACGGCGTTGCGTTTTGACGCGCAACAAATCAACCAAGCCTATCGCCA
AATCGCGCAACAACATCAGCGCGTATCCAGTAGCGACACTTGGTTTGCAGGACAAATGTTGTTGATTACACGCAACGCGC
CTGCTCAAAAACTGTATAACGGTGATGTCGGTATTGTCATGCAGCCTGCACAATCCAAAGGCTTGGTTGCGTGTTTTCCC
GATGAAAACGCAGGCTACCGCACCGTGCCATTGAGCCGTTTGCCCGAACACGAATCCGCCTTTGCGATGACGGTTCACAA
AAGTCAAGGCTCGGAATACGACAGCGTGTGGTATTTTGCGCCGAGTTACAGCACCGCCAGTCGCGCCTTGCTCTACACCG
CCGTAACCCGAGCCAAACAACAATTTGTGTATTGGGGCGATTTAGATAGCGCGGTGCAAGCCAGCCAACACCATGTGCCA
CGCCAAACAGGATTGGCGAATTTTTTGCAGGAAGATAGATAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(500-541)

AAA domain (AAA_30)

(131-325)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae MS11

41.071

97.731

0.401
  recD Neisseria gonorrhoeae strain FA1090

40.893

97.731

0.4

Multiple sequence alignment