Detailed information    

insolico Bioinformatically predicted

Overview


Name   tsaP   Type   Machinery gene
Locus tag   AOLE_RS18575 Genome accession   NC_014259
Coordinates   3946800..3947954 (+) Length   384 a.a.
NCBI ID   WP_013199174.1    Uniprot ID   A0AAN0PBU6
Organism   Acinetobacter oleivorans DR1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 3941800..3952954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOLE_RS18550 (AOLE_18485) - 3941948..3943162 (+) 1215 WP_013199169.1 oxygenase MpaB family protein -
  AOLE_RS18555 (AOLE_18495) - 3943230..3943436 (-) 207 WP_013199171.1 hypothetical protein -
  AOLE_RS18560 (AOLE_18500) - 3943491..3945605 (-) 2115 WP_013199172.1 TonB-dependent copper receptor -
  AOLE_RS18565 (AOLE_18505) - 3945678..3946103 (-) 426 WP_013199173.1 DUF2946 family protein -
  AOLE_RS18570 (AOLE_18510) def 3946147..3946677 (-) 531 WP_004795267.1 peptide deformylase -
  AOLE_RS18575 (AOLE_18515) tsaP 3946800..3947954 (+) 1155 WP_013199174.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  AOLE_RS18580 (AOLE_18520) dprA 3947975..3949108 (+) 1134 WP_013199175.1 DNA-processing protein DprA Machinery gene
  AOLE_RS18585 (AOLE_18525) - 3949158..3949727 (+) 570 WP_013199176.1 L-threonylcarbamoyladenylate synthase -
  AOLE_RS18590 (AOLE_18530) - 3950119..3951039 (-) 921 WP_081399223.1 DMT family transporter -
  AOLE_RS18595 (AOLE_18535) - 3951151..3951804 (-) 654 WP_081399224.1 TetR/AcrR family transcriptional regulator -

Sequence


Protein


Download         Length: 384 a.a.        Molecular weight: 42502.45 Da        Isoelectric Point: 7.3317

>NTDB_id=37705 AOLE_RS18575 WP_013199174.1 3946800..3947954(+) (tsaP) [Acinetobacter oleivorans DR1]
MKKVFNGMVEFHALGIKKHLLAFALFTGVAMGTVAEVHAASPNHNPPSLKGNAPHVYVVKRGDTLWDISGHFLSKPWRWP
EIWANNQHVKNPHWIYPGDRLLLCSLAGRPLIGKDEGDGCVGIIRRYTGQMTNLQPQVRVESLNDNVPVIPLEHIKQWLE
HSTILPADAIEHTPYIVGTADQRVLAARGQTIYARGQGLVNGQRYAVYREGEPYYFTDSKGKKHSLGIELQQVASGIAIS
SEKDITTLELTDSYNSEVRRGDRVMPEEEATLPTLFYPVDATQVTDAGKIIRVMGSIGSAAKNSVVTLDRGTAQGIQVGQ
VFDITQKGETIRDPKTKEPIQLPGQQIGSLMVFRTFDQLSYAYVLESDLPIKVGSSIQPPRFDD

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=37705 AOLE_RS18575 WP_013199174.1 3946800..3947954(+) (tsaP) [Acinetobacter oleivorans DR1]
ATGAAAAAGGTTTTTAACGGCATGGTTGAATTTCATGCTTTGGGGATAAAAAAGCATTTACTTGCTTTCGCACTTTTTAC
AGGGGTTGCAATGGGTACAGTAGCAGAGGTTCATGCTGCTAGTCCAAACCATAATCCACCCTCTCTAAAAGGTAATGCAC
CACATGTCTACGTTGTAAAACGCGGAGATACGCTGTGGGATATTTCCGGTCATTTCCTAAGTAAACCTTGGCGCTGGCCA
GAAATCTGGGCAAATAATCAGCATGTCAAAAATCCACACTGGATTTATCCTGGTGACCGATTGTTGTTATGCAGTTTAGC
GGGTCGACCATTGATCGGTAAGGATGAGGGAGATGGTTGCGTTGGCATTATTCGTCGCTACACAGGCCAAATGACAAACT
TGCAACCTCAAGTTCGTGTGGAATCGCTTAACGACAATGTACCTGTTATTCCGCTTGAACATATCAAACAGTGGTTAGAA
CACAGCACAATTTTGCCAGCCGACGCAATTGAACACACTCCTTATATTGTGGGTACTGCTGATCAACGCGTGCTTGCGGC
AAGAGGCCAAACCATTTATGCGCGTGGACAAGGTTTAGTTAATGGCCAACGTTATGCAGTCTACCGTGAAGGCGAACCTT
ATTATTTCACAGACAGTAAAGGTAAAAAGCATAGTCTAGGTATTGAACTACAACAAGTTGCCTCAGGGATTGCGATCTCT
TCTGAAAAAGACATAACAACACTTGAGTTAACTGATAGCTACAATTCCGAAGTACGCCGTGGTGATCGGGTTATGCCGGA
AGAAGAAGCAACATTACCTACTTTATTTTATCCAGTAGATGCCACTCAAGTTACAGATGCTGGCAAGATCATTCGTGTAA
TGGGTTCAATTGGCAGCGCTGCAAAAAATAGTGTGGTGACTTTGGACCGAGGTACAGCACAAGGGATTCAAGTAGGGCAA
GTTTTTGATATTACTCAAAAGGGTGAGACTATTCGAGACCCTAAAACCAAAGAACCAATACAGTTACCAGGACAACAGAT
TGGTAGTCTGATGGTTTTCAGAACCTTTGATCAGCTTAGCTATGCCTACGTATTAGAAAGTGACCTACCTATTAAAGTTG
GTTCAAGTATTCAGCCACCTCGTTTTGATGATTAA

Domains


Predicted by InterproScan.

(57-102)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

89.583

100

0.896


Multiple sequence alignment