Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   HBA48_RS07905 Genome accession   NZ_CP050135
Coordinates   1514212..1517652 (+) Length   1146 a.a.
NCBI ID   WP_038311152.1    Uniprot ID   -
Organism   Kingella kingae strain ATCC 23331     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1509212..1522652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA48_RS07870 (HBA48_07905) iscX 1510069..1510266 (-) 198 WP_003785505.1 Fe-S cluster assembly protein IscX -
  HBA48_RS07875 (HBA48_07910) metZ 1510480..1511658 (+) 1179 WP_003785503.1 O-succinylhomoserine sulfhydrylase -
  HBA48_RS07880 (HBA48_07915) - 1511750..1511947 (+) 198 WP_003785502.1 DUF2788 domain-containing protein -
  HBA48_RS07885 (HBA48_07920) - 1512036..1512581 (+) 546 WP_038306943.1 septation protein A -
  HBA48_RS07890 (HBA48_07925) - 1512578..1512871 (+) 294 WP_173020718.1 YciI family protein -
  HBA48_RS07895 (HBA48_07930) - 1512868..1513140 (+) 273 WP_003785498.1 BolA family protein -
  HBA48_RS07900 (HBA48_07935) - 1513156..1514037 (+) 882 WP_038311154.1 peptidyl-prolyl cis-trans isomerase -
  HBA48_RS07905 (HBA48_07940) recC 1514212..1517652 (+) 3441 WP_038311152.1 exodeoxyribonuclease V subunit gamma Machinery gene
  HBA48_RS07910 (HBA48_07945) - 1517998..1518306 (-) 309 WP_003789511.1 hypothetical protein -
  HBA48_RS07915 (HBA48_07950) - 1518334..1519284 (-) 951 WP_043903165.1 phosphatidate cytidylyltransferase -
  HBA48_RS07920 (HBA48_07955) - 1519306..1519971 (-) 666 WP_032133847.1 lysophospholipid acyltransferase family protein -

Sequence

Protein


Download         Length: 1146 a.a.        Molecular weight: 130996.13 Da        Isoelectric Point: 5.6064

>NTDB_id=377004 HBA48_RS07905 WP_038311152.1 1514212..1517652(+) (recC) [Kingella kingae strain ATCC 23331]
MLHLYQSNQLENLAQMMLNLHQSQPLSHPLQAEYILVQSQGMRRYINQYWAQHSPIAANLHFELPAQLAWQLMREALPNA
PKLSPFSSDVMQWRLLQLFQSRHFAEDSELASAQEMLRDYVQQGEMSAYQLARQLADVFDQYLMYRPDWIEAWSNQQNVA
ELSQREDCAQEQQWQAAIWRELLRDEQRAPHRAQMQRVLMDSLANQTIRRLPERILMFGITALAPSHLQLLQEIAKQRDV
HIFALNPSAMYWGDLLEPAQILQQTDDVDLSLQGHPLLASWGKQGRDFFNDLSVAEARQDEAHQQFAEQAKSPNLLHSLQ
YQIQQLVLPEQAHDDDWLAQHDAYLRESVLQQNLDVGEYYVRHVQQDLSPEQKAMVQLNADSSLHIHSAHSPLRELQILK
DRILLALAQNPSWQPHDIAVLTPNIEPYAPFIDSVFGEYSDAPLPYSLADVKLTRKQPALDALAQALDLLNSRFEAEQVL
ALLNTEPVLQQWHINRADLPLLHSAVAELNIRWGSDASERAQYGDANNLFTWQQGLDRLVLGWLQPAQSGATWQNIAPHT
SHPDHLPILANFVAFVRFLSHTKQQWQQPASVAQWCERLQQFTQTLLGDGDTTQQAALQTWRKALDDWQEQAEIAQFSEP
LSSPIACQHIRRSLDEPTDAGLLRGGITFCSMVPMRSLPFKMLCLLGLNDGTFPRNTKAAPFDLIAKQPRKGDRSRRDDD
RYLFLEAILSAREQLYLSYIGRDIRSDAERAPSTLLSELVDTISALSDVPSSDLYQHWVTHHPLQAFSRRYFASAEQDNP
HLSSTRSDFAHALNLAQQGQTHQAKNFVDWRNTDNDPATLIRQKDFLRFWRNPVRHWLHHTLNWQSPYFAGNHESEEPFL
SDQPRRLDDAYVQARMHNQSFDDTAAYLRAQSLLPAGELGKQEAKSYEIAAKALDTNLLNSPRLPHRSGELACGQGSLHF
DLSHNHEAGQILLARDFLSDNNTHGKLTSPDQVQLLLQHLIYCAATPDHEPVARQTHYVSLTQQMSLPPMSQAQAQAALS
VWLAYYAQGQQAPLPYFARVNWAAAMALYTKKDANWLVAQNAAADKYHAGYFGMAQEDYPEVQLVFGRDPDAEPLYTLPE
FQQITEDLFEPLQVCLQAFADNKDKK

Nucleotide


Download         Length: 3441 bp        

>NTDB_id=377004 HBA48_RS07905 WP_038311152.1 1514212..1517652(+) (recC) [Kingella kingae strain ATCC 23331]
ATGCTGCACCTATATCAATCCAACCAACTCGAAAACTTGGCGCAGATGATGTTAAACCTACATCAATCGCAGCCTTTGTC
GCACCCGTTGCAGGCGGAATACATTTTGGTGCAAAGCCAAGGCATGCGCCGCTACATCAACCAATATTGGGCGCAGCATT
CGCCCATTGCCGCCAATTTGCACTTTGAATTGCCCGCACAACTGGCGTGGCAACTGATGCGCGAAGCCTTGCCCAATGCG
CCCAAATTAAGCCCATTTTCTAGCGATGTGATGCAATGGCGATTGCTGCAATTATTCCAATCGCGCCATTTTGCGGAAGA
CAGCGAACTGGCATCGGCACAAGAAATGTTGCGCGATTATGTGCAGCAGGGCGAAATGTCGGCGTATCAATTAGCGCGAC
AGCTTGCCGATGTGTTCGACCAATATTTGATGTATCGCCCCGATTGGATTGAAGCGTGGTCAAATCAACAAAATGTAGCG
GAATTGTCGCAGCGCGAAGATTGCGCCCAAGAACAGCAATGGCAAGCGGCAATTTGGCGCGAATTGTTGCGCGATGAACA
ACGCGCTCCGCATCGAGCGCAAATGCAGCGCGTGTTAATGGATTCGTTGGCAAATCAAACAATTCGCAGGCTGCCCGAGC
GGATTTTAATGTTTGGGATTACTGCCCTTGCGCCATCGCATTTGCAACTGTTGCAAGAAATCGCCAAACAGCGCGATGTA
CATATTTTTGCGCTCAACCCCAGTGCGATGTATTGGGGCGATTTGCTTGAACCTGCACAAATTTTGCAGCAAACCGATGA
CGTGGATTTGTCGTTGCAAGGACACCCATTGCTGGCATCGTGGGGCAAACAAGGGCGCGATTTTTTCAACGATTTGAGCG
TTGCCGAAGCGCGTCAAGATGAAGCGCATCAGCAATTTGCCGAGCAAGCGAAGTCGCCCAATTTACTGCACAGTTTGCAA
TACCAAATCCAGCAGCTAGTGTTGCCCGAACAGGCGCACGATGACGATTGGTTGGCACAGCACGATGCTTATTTGCGCGA
ATCGGTGTTGCAACAAAATTTGGACGTGGGCGAATACTATGTCCGCCACGTTCAGCAAGATTTGTCGCCCGAACAAAAAG
CGATGGTGCAGCTCAACGCCGATAGCAGCCTGCACATTCACAGCGCACACAGTCCGTTGCGCGAATTGCAGATTTTAAAA
GACCGCATTTTGCTTGCTTTGGCGCAAAACCCAAGTTGGCAGCCACACGATATTGCCGTACTCACCCCCAATATTGAGCC
ATACGCGCCGTTTATTGACAGCGTGTTTGGCGAATATTCCGATGCGCCTTTGCCGTATTCGCTTGCCGATGTCAAACTCA
CGCGCAAGCAGCCTGCACTTGATGCTTTGGCGCAAGCGTTGGATTTGCTCAACAGCCGTTTTGAAGCGGAACAAGTGTTG
GCATTGCTCAACACCGAACCCGTGTTGCAACAATGGCACATCAACCGCGCCGACTTGCCCTTGCTGCACAGCGCGGTTGC
CGAACTCAATATCCGCTGGGGCAGCGATGCCAGCGAACGCGCCCAATATGGCGATGCCAATAATTTGTTTACATGGCAAC
AAGGGCTAGACCGCTTGGTTTTGGGCTGGTTGCAGCCTGCACAATCAGGCGCAACGTGGCAAAACATCGCGCCCCACACC
AGCCACCCCGACCATTTGCCGATTTTGGCGAATTTTGTCGCGTTTGTGCGATTCCTGTCCCACACCAAACAACAATGGCA
ACAACCAGCCAGCGTGGCGCAATGGTGCGAACGCTTGCAACAGTTCACACAAACCTTATTGGGCGATGGCGACACCACGC
AACAAGCCGCCTTGCAAACGTGGCGCAAAGCCTTGGACGATTGGCAAGAGCAAGCCGAAATCGCCCAATTTAGCGAACCA
TTATCCAGCCCCATTGCCTGCCAACACATTCGCCGTAGCTTGGACGAACCAACCGATGCAGGCTTGTTGCGCGGTGGCAT
CACGTTTTGCAGCATGGTTCCGATGCGCTCTTTGCCGTTTAAGATGTTGTGTTTATTGGGATTGAATGACGGCACGTTTC
CGCGCAACACCAAAGCCGCACCGTTTGACTTAATCGCCAAACAACCGCGCAAAGGCGACCGTTCGCGCCGTGATGACGAC
CGTTATTTGTTTTTGGAAGCGATTTTATCGGCACGCGAACAGCTTTATTTGTCCTACATTGGGCGCGATATTCGCAGCGA
TGCCGAACGCGCACCGTCCACGCTATTGAGCGAATTGGTGGACACGATTTCCGCTTTGAGCGATGTGCCAAGCAGCGATT
TGTATCAGCATTGGGTTACGCATCACCCCTTGCAGGCGTTTTCGCGCCGATATTTTGCATCTGCCGAACAGGACAACCCA
CACTTATCCAGCACGCGCAGCGACTTTGCCCACGCGCTGAATTTGGCGCAACAAGGTCAAACGCATCAAGCCAAAAATTT
TGTCGATTGGCGCAACACAGACAACGACCCAGCCACTTTAATCCGCCAAAAAGATTTTTTACGCTTTTGGCGCAACCCCG
TTCGCCATTGGCTGCACCACACTTTGAACTGGCAAAGCCCGTATTTTGCAGGCAACCACGAAAGCGAAGAGCCATTTTTG
TCCGACCAACCGCGCCGTTTGGACGATGCCTATGTGCAGGCGCGAATGCATAATCAATCGTTTGATGACACTGCGGCTTA
TCTTCGCGCCCAAAGTTTGTTGCCAGCAGGCGAACTGGGTAAGCAAGAAGCAAAAAGTTATGAAATTGCAGCAAAGGCGT
TGGATACCAATTTGCTTAATAGTCCGCGTTTGCCGCATCGTTCGGGCGAATTAGCTTGCGGACAGGGCAGCCTGCACTTT
GATTTGTCGCACAACCACGAAGCAGGGCAAATCTTGTTGGCACGTGATTTTTTAAGCGATAACAACACGCACGGCAAATT
GACATCGCCCGACCAAGTGCAACTGTTGCTGCAACATTTGATTTATTGCGCGGCAACGCCCGACCATGAACCTGTGGCAC
GGCAAACGCATTATGTGAGCCTGACACAGCAAATGAGCTTGCCACCGATGTCGCAAGCGCAAGCGCAGGCTGCTTTGAGC
GTGTGGCTGGCTTATTACGCGCAAGGGCAGCAAGCACCGTTGCCCTATTTTGCGCGAGTAAACTGGGCGGCGGCGATGGC
GTTGTACACCAAAAAAGATGCCAACTGGTTGGTAGCGCAAAACGCAGCGGCAGACAAATACCACGCTGGCTATTTTGGCA
TGGCGCAGGAAGATTACCCCGAAGTGCAGCTGGTGTTTGGGCGCGACCCCGATGCCGAACCGCTATACACCTTGCCCGAA
TTTCAGCAGATAACGGAAGATTTGTTTGAGCCGTTGCAGGTGTGTTTGCAGGCGTTTGCGGACAATAAAGATAAGAAATA
G

Domains

Predicted by InterProScan.

RecC C-terminal domain (RecC_C)

(841-1067)

Exodeoxyribonuclease V, gamma subunit (RecC_N)

(2-325)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

44.92

97.906

0.44
  recC Neisseria gonorrhoeae MS11

44.831

97.906

0.439