Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   HBA48_RS07810 Genome accession   NZ_CP050135
Coordinates   1500175..1500657 (-) Length   160 a.a.
NCBI ID   WP_032828136.1    Uniprot ID   -
Organism   Kingella kingae strain ATCC 23331     
Function   DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1495175..1505657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA48_RS07790 (HBA48_07825) clpS 1497246..1497545 (-) 300 WP_166503278.1 ATP-dependent Clp protease adapter ClpS -
  HBA48_RS07795 (HBA48_07830) - 1497731..1497934 (+) 204 WP_003785524.1 cold-shock protein -
  HBA48_RS07800 (HBA48_07835) dusA 1497957..1499030 (+) 1074 WP_003789541.1 tRNA dihydrouridine(20/20a) synthase DusA -
  HBA48_RS07805 (HBA48_07840) - 1499034..1500110 (+) 1077 WP_003789537.1 AI-2E family transporter -
  HBA48_RS07810 (HBA48_07845) comP 1500175..1500657 (-) 483 WP_032828136.1 type IV pilin protein Machinery gene
  HBA48_RS07815 (HBA48_07850) rpsT 1500814..1501077 (+) 264 WP_003785519.1 30S ribosomal protein S20 -
  HBA48_RS07820 (HBA48_07855) - 1501138..1501683 (-) 546 WP_003785518.1 RNA pyrophosphohydrolase -
  HBA48_RS07825 (HBA48_07860) - 1501789..1501995 (+) 207 WP_003785517.1 hypothetical protein -
  HBA48_RS07830 (HBA48_07865) - 1501992..1502387 (+) 396 WP_038311131.1 VanZ family protein -
  HBA48_RS07840 (HBA48_07875) mltB 1502679..1503791 (+) 1113 WP_166503279.1 lytic murein transglycosylase B -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17920.48 Da        Isoelectric Point: 9.1760

>NTDB_id=377003 HBA48_RS07810 WP_032828136.1 1500175..1500657(-) (comP) [Kingella kingae strain ATCC 23331]
MAKNRNVASYRSAGFTLMEVLVAVAIVGILVAFAYPMYQESVKKGRLSDAQKALLDNAQAWERHYASHGNFRKTSRLWID
LPIRETDFFCIRPQGAPRGATHDGQFAFKAVALNKQQEPRALILNQDLTMLLCESTTSACSETDFFANPSRADKNCRAYP

Nucleotide


Download         Length: 483 bp        

>NTDB_id=377003 HBA48_RS07810 WP_032828136.1 1500175..1500657(-) (comP) [Kingella kingae strain ATCC 23331]
ATGGCTAAAAATAGAAATGTTGCGTCTTACCGTTCGGCTGGATTCACGTTAATGGAAGTGTTGGTGGCAGTGGCAATCGT
GGGGATTTTGGTGGCGTTTGCGTATCCGATGTATCAAGAATCGGTAAAAAAAGGGCGGTTGAGCGATGCACAAAAGGCCT
TGCTGGATAACGCACAGGCATGGGAGCGTCATTACGCATCGCATGGCAATTTCCGTAAAACATCGCGCTTGTGGATTGAT
TTGCCGATTCGGGAAACGGACTTTTTTTGTATTCGTCCGCAAGGTGCGCCGCGTGGTGCAACACATGACGGGCAATTTGC
GTTTAAGGCGGTTGCGCTGAATAAACAGCAAGAACCACGTGCTTTGATTTTGAATCAGGATTTGACGATGTTGCTGTGCG
AAAGTACGACATCGGCATGCAGCGAAACCGATTTTTTTGCGAACCCTAGTCGTGCGGATAAAAATTGTCGAGCATATCCG
TAA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(36-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(11-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Neisseria subflava NJ9703

39.726

91.25

0.362