Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HBA48_RS04985 Genome accession   NZ_CP050135
Coordinates   942782..943258 (-) Length   158 a.a.
NCBI ID   WP_032827749.1    Uniprot ID   -
Organism   Kingella kingae strain ATCC 23331     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 937782..948258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA48_RS04945 (HBA48_04970) - 937862..938431 (-) 570 WP_003786770.1 hypothetical protein -
  HBA48_RS04950 (HBA48_04975) - 938461..939096 (-) 636 WP_032827710.1 BON domain-containing protein -
  HBA48_RS04955 (HBA48_04980) - 939227..939820 (-) 594 WP_003786775.1 phosphoheptose isomerase -
  HBA48_RS04960 (HBA48_04985) - 939826..940170 (-) 345 WP_003786777.1 YraN family protein -
  HBA48_RS04965 (HBA48_04990) tsaB 940173..940859 (-) 687 WP_003786779.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  HBA48_RS04970 (HBA48_04995) - 940935..941228 (-) 294 WP_003786781.1 DapH/DapD/GlmU-related protein -
  HBA48_RS04975 (HBA48_05000) - 941369..941974 (+) 606 WP_003786783.1 nitroreductase family protein -
  HBA48_RS04980 (HBA48_05005) - 942048..942785 (-) 738 WP_003786785.1 5'-methylthioadenosine/adenosylhomocysteine nucleosidase -
  HBA48_RS04985 (HBA48_05010) luxS 942782..943258 (-) 477 WP_032827749.1 S-ribosylhomocysteine lyase Regulator
  HBA48_RS04990 (HBA48_05015) typA 943435..945252 (+) 1818 WP_003786789.1 translational GTPase TypA -
  HBA48_RS04995 (HBA48_05020) parC 945351..947624 (+) 2274 WP_038310763.1 DNA topoisomerase IV subunit A -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17962.46 Da        Isoelectric Point: 4.9630

>NTDB_id=376985 HBA48_RS04985 WP_032827749.1 942782..943258(-) (luxS) [Kingella kingae strain ATCC 23331]
MNITTEKRMNVESFNLDHTKVKAPYVRLACITDGDHGDIIYKYDLRVCQPNQDHMDMPSLHSLEHLMAELSRNHSDKIVD
ISPMGCQTGFYVTLLNLPEYQDALNLIEKTLRDVVVATEVPACNVVQCGWAASHSLEGAQKIAQYLLDNRVQWEEIFA

Nucleotide


Download         Length: 477 bp        

>NTDB_id=376985 HBA48_RS04985 WP_032827749.1 942782..943258(-) (luxS) [Kingella kingae strain ATCC 23331]
ATGAACATCACTACCGAAAAAAGAATGAACGTAGAGAGCTTTAATTTGGACCATACCAAAGTAAAAGCCCCCTATGTGCG
CCTTGCCTGCATCACAGATGGCGACCACGGTGATATTATCTATAAATACGACTTGCGCGTTTGCCAGCCCAATCAAGACC
ACATGGATATGCCGTCTTTGCATTCGCTGGAACATTTAATGGCAGAATTGTCGCGCAATCATTCCGATAAAATTGTGGAC
ATTAGCCCAATGGGTTGCCAAACAGGCTTTTATGTAACCTTGTTGAATTTGCCCGAATACCAAGACGCACTTAACTTAAT
TGAAAAAACACTACGCGATGTCGTAGTGGCGACCGAAGTCCCTGCTTGCAACGTAGTGCAATGCGGTTGGGCGGCAAGTC
ACAGTTTAGAAGGCGCACAAAAAATCGCGCAATATTTGCTCGATAATCGCGTACAATGGGAGGAAATTTTCGCATGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(10-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

40.972

91.139

0.373