Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   HBA50_RS08305 Genome accession   NZ_CP050133
Coordinates   1658069..1658674 (+) Length   201 a.a.
NCBI ID   WP_045498594.1    Uniprot ID   -
Organism   Streptococcus cristatus ATCC 51100     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1653069..1663674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA50_RS10565 (HBA50_08275) - 1653354..1653533 (-) 180 Protein_1627 KxYKxGKxW signal peptide domain-containing protein -
  HBA50_RS08280 (HBA50_08280) - 1653846..1655309 (-) 1464 WP_045498606.1 cell division site-positioning protein MapZ family protein -
  HBA50_RS08285 (HBA50_08285) - 1655322..1656476 (-) 1155 WP_045498603.1 class I SAM-dependent RNA methyltransferase -
  HBA50_RS08295 (HBA50_08295) gpsB 1657058..1657402 (-) 345 WP_045498600.1 cell division regulator GpsB -
  HBA50_RS08300 (HBA50_08300) - 1657474..1658001 (-) 528 WP_045498597.1 DUF1273 domain-containing protein -
  HBA50_RS08305 (HBA50_08305) recU 1658069..1658674 (+) 606 WP_045498594.1 Holliday junction resolvase RecU Machinery gene
  HBA50_RS08310 (HBA50_08310) pbp1a 1658667..1660817 (+) 2151 WP_045498591.1 penicillin-binding protein PBP1A -
  HBA50_RS08315 (HBA50_08315) pepC 1660899..1662245 (-) 1347 WP_045498588.1 aminopeptidase C -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23202.97 Da        Isoelectric Point: 9.9972

>NTDB_id=376940 HBA50_RS08305 WP_045498594.1 1658069..1658674(+) (recU) [Streptococcus cristatus ATCC 51100]
MVNYPHKLKIKSKLAHPGSKTTVNFANRGMSFEKMINESNNYYLSRGLAVIHKKPTPIQIVKVDYPQRSRAKIVEAYFRQ
ASTTDYSGVFKGHYIDFEAKETRQKTAMPLKNFHLHQIEHMEAVLQQKGICFVLLHFSSLRETYLLPASYLITFYKMDKG
GKSLPLSYIQEHGFLIETKQFPSIPYLEIIEQKLLGGITNE

Nucleotide


Download         Length: 606 bp        

>NTDB_id=376940 HBA50_RS08305 WP_045498594.1 1658069..1658674(+) (recU) [Streptococcus cristatus ATCC 51100]
ATGGTCAACTACCCTCACAAGCTAAAGATAAAAAGTAAACTAGCCCATCCAGGTTCAAAGACGACTGTTAACTTTGCCAA
TCGTGGGATGTCTTTTGAGAAGATGATCAACGAATCCAACAACTACTATTTGAGTAGGGGGCTCGCTGTCATTCATAAGA
AGCCGACACCCATTCAGATTGTCAAAGTGGATTATCCTCAACGCAGTCGTGCAAAGATTGTGGAGGCCTACTTCCGACAG
GCATCCACGACTGATTATTCTGGTGTCTTTAAGGGACATTATATTGATTTTGAAGCCAAGGAAACACGGCAAAAAACAGC
CATGCCTCTGAAGAATTTCCATCTACACCAGATTGAACATATGGAGGCTGTCCTTCAGCAAAAAGGAATCTGCTTTGTCT
TACTGCACTTCTCTAGCTTGCGGGAGACTTATCTACTTCCGGCATCTTATTTGATTACATTTTATAAGATGGATAAAGGC
GGAAAATCCCTCCCTTTATCTTACATTCAAGAACATGGATTTTTAATCGAAACAAAGCAATTTCCAAGCATCCCTTACCT
TGAAATTATCGAACAAAAACTACTAGGTGGTATCACAAATGAATAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(28-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

48.731

98.01

0.478