Detailed information    

insolico Bioinformatically predicted

Overview


Name   rexA   Type   Machinery gene
Locus tag   HBA50_RS06620 Genome accession   NZ_CP050133
Coordinates   1318252..1321923 (-) Length   1223 a.a.
NCBI ID   WP_045499364.1    Uniprot ID   -
Organism   Streptococcus cristatus ATCC 51100     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1313252..1326923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA50_RS06600 (HBA50_06600) - 1314707..1315063 (-) 357 WP_045499790.1 hypothetical protein -
  HBA50_RS10385 - 1315132..1315264 (-) 133 Protein_1294 AAA family ATPase -
  HBA50_RS06605 (HBA50_06605) - 1315395..1315760 (-) 366 WP_045499372.1 membrane protein -
  HBA50_RS06610 (HBA50_06610) - 1315797..1317110 (-) 1314 WP_045499369.1 glycosyltransferase family 4 protein -
  HBA50_RS06615 (HBA50_06615) - 1317112..1318110 (-) 999 WP_045499367.1 glycosyltransferase family 4 protein -
  HBA50_RS06620 (HBA50_06620) rexA 1318252..1321923 (-) 3672 WP_045499364.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  HBA50_RS06625 (HBA50_06625) rexB 1321920..1325207 (-) 3288 WP_045499361.1 ATP-dependent nuclease subunit B Machinery gene
  HBA50_RS06630 (HBA50_06630) tuf 1325347..1326543 (-) 1197 WP_005590656.1 elongation factor Tu -

Sequence


Protein


Download         Length: 1223 a.a.        Molecular weight: 140602.22 Da        Isoelectric Point: 5.0011

>NTDB_id=376920 HBA50_RS06620 WP_045499364.1 1318252..1321923(-) (rexA) [Streptococcus cristatus ATCC 51100]
MRRIPFLNEQDILVKQAEEAASDKPQKRTPEQIQAIYSSGQNILVSASAGSGKTYVMVQRIIDQILRGVEVSQLFISTFT
VKAAGELKERLEKELSLVLKETSDQELRQHLAQQLAEIANADIGTMDAFTQKVVNKYGYLLGLAPHFRILQSASEQLIMQ
NEVFDQLFDTYYESDQQELFSRLVKNFTGKRKDISGFRQQIYSIYSFLQSTSNPRKWLEETFLLGYETSDFGAERERILS
GARQSLLDLEDFFQSHLAHEGQAFAGAKYQENVQAALDILTELTEQTKSEQLLDLIQRFLELAKASKHQAFTARVGKNAD
ELKKELAQTYNEARKPLIERIKELDVRLYHLDFMEQHQAEALPLLDLLRDFVRDFSQAYLERKVAENAFEFGDISHFAIE
ILENYPEVRRFYQDKYHEVMVDEYQDTNHTQERMLELLARGNNRFMVGDIKQSIYRFRQADPQIFNDKFKLYQADPSQGK
LIILKENFRSHIEVLEATNDVFKRLMDEEIGEIDYNETHYLVAGNPAKREPNPANQAEFLLYDGSADSEEEDSDQGLPSI
SAGEVALVIKEIIRLHNQEGVDFKDITLLTASRTRNDLILAEFDRHHIPIVPDDGETNYLQSVEVMVMLDTLRTINNPLN
DYALTALLKSPMFDFDEDELARLALQASSTKSMENLYEKLRNALADQGLEPQLIHDELRKKLQHFQETLDDWRNYSKMHS
LYDLIWKIYQDRFYYDMVGALPNGEQRQANLYALSLRANDYEKSSFKGLSRFISMIDRILKNEHDLASVPLAAPKNAVQL
MTIHKSKGLEFKYVFLLNMDKAFNRQDSSSAIILSRKKGIGIKYIADVDVEAQDPHAPKQIRISMETLPYQQNAEELKLA
SLSEQMRLLYVAMTRAETKLYLVGKGKQAKLQERKWGSSQNGRLSSSLRSQLTNFQDWLYAIQSVFEKENLAYQTRFVTD
QELTDEQIGLVEQADPIPVDDLTGNRQSEDIRRALDILENVDRLNSLYQAAIELPSVRTPSQIKKFYEPVMDSEGLDIMD
APRSYQTQLSFELPDFGKKKQVTGAQIGSAVHELMQRIPLDRPITKTSIRQALAQVQADAAVKKEIDLAKIEAFFAKELG
QLIQHQANHLHREAPFAMLKQDPASGQDFVVRGILDGYLLFNDRIVLFDYKTDRYHEPTELVERYRAQLDLYAEALSRSY
GLSQVDKYLILLGGAELQVVKVD

Nucleotide


Download         Length: 3672 bp        

>NTDB_id=376920 HBA50_RS06620 WP_045499364.1 1318252..1321923(-) (rexA) [Streptococcus cristatus ATCC 51100]
ATGAGACGGATTCCCTTTTTAAACGAGCAGGATATCCTAGTCAAGCAGGCTGAGGAAGCTGCCTCTGACAAGCCACAAAA
GCGCACACCAGAGCAGATCCAGGCTATCTACTCCTCTGGTCAGAATATTCTTGTTTCGGCTTCGGCTGGCTCTGGTAAGA
CCTATGTTATGGTTCAGCGGATTATTGACCAGATTCTCAGAGGTGTGGAGGTCAGCCAACTCTTCATCTCCACTTTCACT
GTCAAGGCAGCAGGTGAGCTTAAGGAGCGACTGGAGAAGGAGCTGAGTCTGGTACTCAAGGAGACTTCAGATCAGGAACT
CCGCCAGCATCTGGCCCAGCAGTTAGCTGAGATTGCCAATGCGGATATTGGTACTATGGATGCTTTTACACAGAAAGTAG
TCAATAAGTACGGCTATTTGTTGGGGTTGGCACCGCATTTTCGGATTTTACAGTCGGCCAGTGAGCAGCTCATTATGCAA
AATGAAGTCTTTGACCAGCTTTTCGATACCTACTATGAGAGTGATCAGCAGGAATTATTTAGTCGCTTGGTCAAAAATTT
CACTGGTAAGCGCAAGGACATTTCTGGTTTCCGCCAGCAGATTTATAGTATTTATAGTTTTCTCCAGTCTACTAGTAATC
CGCGGAAATGGTTGGAAGAGACCTTTCTTCTAGGCTATGAAACCAGTGATTTTGGAGCAGAGAGGGAGCGAATCCTGTCT
GGAGCTAGGCAGTCTTTGCTGGATTTGGAAGATTTTTTCCAGAGCCATTTGGCTCATGAAGGTCAGGCCTTTGCTGGGGC
TAAATATCAGGAAAATGTTCAGGCAGCCTTAGATATCTTGACTGAGTTGACAGAGCAGACCAAATCTGAGCAGTTACTAG
ACCTGATTCAGCGCTTTTTAGAATTAGCCAAGGCCTCTAAACATCAGGCTTTTACTGCCCGAGTTGGTAAGAATGCAGAC
GAGCTCAAAAAAGAGCTGGCTCAGACCTATAATGAAGCCCGCAAGCCCTTGATAGAGCGAATTAAAGAGCTGGATGTCCG
CCTCTATCATCTGGACTTTATGGAGCAGCATCAGGCAGAAGCTCTTCCCCTATTGGATTTGTTACGCGATTTTGTCCGAG
ATTTCTCACAAGCTTATTTGGAGCGCAAGGTAGCAGAAAATGCCTTTGAATTTGGTGATATCAGCCATTTTGCAATTGAG
ATTTTAGAAAATTATCCAGAAGTGCGGCGTTTTTATCAAGATAAGTACCATGAGGTCATGGTCGATGAGTACCAAGACAC
CAACCATACTCAGGAGCGAATGCTGGAATTGCTGGCTCGAGGGAATAATCGCTTCATGGTTGGCGACATTAAGCAGTCCA
TCTATCGATTTCGCCAGGCCGATCCGCAGATTTTTAATGATAAATTTAAACTCTATCAGGCCGATCCTAGTCAGGGCAAG
CTGATCATCCTCAAGGAAAATTTCCGCAGTCACATCGAGGTGCTGGAAGCGACCAATGATGTCTTTAAACGACTCATGGA
CGAGGAAATCGGCGAGATTGATTACAATGAGACCCACTACTTGGTAGCGGGAAATCCAGCCAAACGGGAGCCAAATCCAG
CCAATCAAGCGGAATTTCTCCTTTATGATGGTAGCGCCGATAGCGAAGAAGAGGATTCTGACCAAGGCCTACCTAGTATT
TCAGCTGGTGAAGTAGCCTTGGTAATCAAGGAAATTATCCGCCTTCATAATCAGGAAGGGGTGGATTTCAAGGATATTAC
CTTGCTGACAGCTTCGCGAACTCGCAATGATCTGATTTTGGCAGAGTTTGACCGGCATCATATCCCGATTGTTCCTGATG
ATGGCGAGACCAACTACCTCCAGTCGGTAGAGGTTATGGTGATGCTGGATACCTTGCGGACCATTAACAATCCTCTCAAT
GACTATGCCCTGACCGCTCTCCTAAAGTCGCCAATGTTTGACTTTGATGAGGATGAATTGGCTCGGCTAGCCTTGCAAGC
CTCCAGTACCAAGTCTATGGAAAATCTCTACGAAAAGCTGAGGAATGCTCTGGCTGATCAAGGTCTGGAACCTCAGCTCA
TCCATGATGAATTGCGCAAGAAACTGCAGCACTTCCAGGAAACGCTGGATGACTGGCGCAACTATTCCAAGATGCATTCT
CTCTATGATTTAATCTGGAAGATTTATCAGGATCGTTTTTACTACGATATGGTGGGGGCTCTGCCCAACGGTGAGCAGCG
TCAGGCCAATCTCTATGCCCTGTCCTTGAGGGCCAACGACTATGAAAAATCGAGTTTCAAGGGTCTGTCCCGCTTTATCA
GCATGATTGACCGAATTTTGAAAAATGAGCACGATTTGGCCAGTGTCCCTCTGGCTGCTCCGAAAAATGCAGTCCAGCTA
ATGACCATCCATAAGAGTAAGGGGCTGGAGTTCAAATATGTCTTTCTACTCAATATGGACAAGGCCTTCAACCGTCAGGA
TAGCAGCTCTGCAATTATCCTCAGCAGAAAAAAAGGCATCGGAATCAAATATATAGCTGATGTGGATGTTGAGGCTCAGG
ATCCTCATGCACCCAAGCAGATCCGCATTTCCATGGAGACCCTACCTTATCAGCAGAATGCCGAAGAACTCAAGCTGGCA
AGCCTGTCTGAGCAGATGCGTCTGCTCTATGTGGCCATGACGCGGGCTGAAACCAAGCTCTATCTGGTCGGCAAGGGCAA
GCAAGCTAAGCTCCAAGAGCGCAAGTGGGGAAGCAGCCAAAATGGGCGCTTGTCTAGCAGTCTCCGAAGCCAGCTGACCA
ATTTTCAGGATTGGCTCTATGCTATTCAGTCAGTGTTTGAAAAGGAAAATCTGGCTTATCAAACCCGCTTTGTAACTGAT
CAGGAGCTGACAGACGAACAGATTGGCTTAGTAGAGCAGGCTGATCCTATTCCAGTAGATGATTTGACGGGCAACCGTCA
GTCAGAGGATATACGCCGAGCTCTGGATATCTTGGAGAATGTAGATCGACTCAACAGCCTCTATCAAGCGGCTATTGAAT
TGCCTAGTGTCCGCACGCCCAGTCAAATCAAGAAGTTCTATGAACCAGTTATGGACTCAGAAGGGCTGGACATTATGGAT
GCGCCTCGAAGTTATCAGACTCAGCTGTCTTTTGAACTGCCTGATTTTGGCAAGAAGAAGCAAGTCACGGGAGCTCAAAT
CGGTTCTGCTGTCCATGAGCTCATGCAAAGGATTCCGCTGGATCGTCCTATTACAAAGACTAGCATTCGTCAAGCCTTGG
CTCAGGTTCAGGCAGATGCGGCAGTCAAGAAAGAGATTGATTTGGCTAAGATTGAAGCCTTTTTCGCTAAAGAACTAGGT
CAGCTAATCCAGCATCAGGCCAATCATCTCCATCGGGAAGCACCTTTTGCCATGCTCAAGCAGGATCCGGCTAGCGGTCA
AGACTTTGTCGTTCGGGGAATCTTAGACGGCTACCTGCTCTTTAATGATCGCATTGTCCTCTTTGACTATAAGACTGACC
GCTATCATGAGCCGACAGAGTTAGTAGAGCGCTACCGAGCTCAATTAGATCTCTATGCAGAGGCGCTCAGTCGTTCCTAT
GGTCTTAGCCAAGTAGACAAATATTTGATTCTACTAGGAGGAGCTGAGCTGCAGGTGGTCAAGGTGGACTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

58.429

99.918

0.584