Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   HBA50_RS05975 Genome accession   NZ_CP050133
Coordinates   1194134..1196353 (-) Length   739 a.a.
NCBI ID   WP_045499658.1    Uniprot ID   -
Organism   Streptococcus cristatus ATCC 51100     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1189134..1201353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA50_RS05950 (HBA50_05950) - 1190832..1191191 (-) 360 WP_045499670.1 hypothetical protein -
  HBA50_RS05955 (HBA50_05955) - 1191193..1191465 (-) 273 WP_045499667.1 hypothetical protein -
  HBA50_RS05960 (HBA50_05960) - 1191767..1192447 (-) 681 WP_045499664.1 DnaD domain-containing protein -
  HBA50_RS05965 (HBA50_05965) metA 1192457..1193398 (-) 942 WP_005590498.1 homoserine O-succinyltransferase -
  HBA50_RS05970 (HBA50_05970) - 1193499..1194011 (-) 513 WP_045499661.1 adenine phosphoribosyltransferase -
  HBA50_RS05975 (HBA50_05975) recJ 1194134..1196353 (-) 2220 WP_045499658.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  HBA50_RS05980 (HBA50_05980) - 1196573..1197625 (-) 1053 WP_045499655.1 acyltransferase -
  HBA50_RS05985 (HBA50_05985) - 1197666..1198376 (-) 711 WP_045499652.1 class I SAM-dependent methyltransferase -
  HBA50_RS05990 (HBA50_05990) - 1198383..1199138 (-) 756 WP_045499649.1 SDR family oxidoreductase -
  HBA50_RS05995 (HBA50_05995) rnz 1199135..1200064 (-) 930 WP_045499646.1 ribonuclease Z -
  HBA50_RS06000 (HBA50_06000) - 1200075..1200698 (-) 624 WP_045499643.1 cystathionine beta-lyase -

Sequence

Protein


Download         Length: 739 a.a.        Molecular weight: 82719.44 Da        Isoelectric Point: 4.4555

>NTDB_id=376913 HBA50_RS05975 WP_045499658.1 1194134..1196353(-) (recJ) [Streptococcus cristatus ATCC 51100]
MISSKYDWQFATNFTDEKFLKKAKKAGLEPAAASLLYQRGVQTEEALQEFLEPSLDQLHDPYDLHDMERAVERIRSAIEN
YEQILIYGDYDADGMTSASIVKEALDQLGAECQVYLPNRFTDGYGPNSSVYKYFIENHGISLIITVDNGVAGLEAIELAQ
SLGVDVIVTDHHSMPEELPNAYAIVHPEHSGADYPFKHLAGCGVAFKLATALLEEVQVELLDLVAIGTIADMVSLTGENR
ILVKYGLSVLKNTQRVGLQELFKIAGIQPDELDEETVGFQLAPRLNALGRLDDPNPAIELLTGFDDEEARDIALMVNQKN
DERKEIVQQIYEEAQTMLDPKRPVQVLAKEGWNPGVLGIVAGRLLEELHQPVIVLNIEAGIAKGSARSIEAVNIFEALDS
HRDLFLAFGGHAGAAGMTLEADKLAELSDILTAYILDNDLDLTGKTTLYLDEELHLPELTLDTLKSFEKLAPFGMNNKKP
LFYLKDFKVDNARTMGAGNSHLKLKISQEDASFEVVAFGQGNLATEFAQTKNLELAVSLSVNKWKGQTSLQLMLVDARVD
GVQLFNIRSKNATLPDKVPVLRFTEELPDLTNSRAVVVYDLPDDLQVLKKILQSQNFDAIYFKNEIAKSYYLTGYGTREQ
FAKLYKTIYQFPEFDVRYKLKELAAYLKIDPILLVKMIQIFEELGFVSITEGVMTVNKEAEKKEIESSRIYQDLKRLVKE
QELMALGTVQEIYDYLMDC

Nucleotide


Download         Length: 2220 bp        

>NTDB_id=376913 HBA50_RS05975 WP_045499658.1 1194134..1196353(-) (recJ) [Streptococcus cristatus ATCC 51100]
ATGATTAGCTCAAAATATGACTGGCAGTTTGCCACTAATTTTACAGACGAAAAATTTTTAAAAAAGGCTAAAAAAGCTGG
ATTAGAACCTGCCGCTGCCAGTCTTCTTTATCAAAGAGGCGTGCAGACTGAAGAGGCCTTACAGGAATTTTTGGAGCCTA
GTTTAGACCAGCTTCACGATCCTTATGACCTGCATGATATGGAGCGAGCAGTGGAGCGCATTCGCTCAGCGATTGAGAAT
TACGAGCAGATTTTGATCTATGGCGATTACGATGCTGATGGTATGACCTCGGCATCTATTGTCAAGGAAGCCTTGGACCA
GCTGGGGGCTGAGTGTCAGGTCTATCTGCCCAATCGCTTTACGGACGGCTATGGTCCTAATAGCAGTGTTTACAAGTATT
TTATTGAAAATCATGGCATCTCGCTCATTATTACGGTTGATAATGGAGTGGCTGGTCTTGAAGCTATCGAGCTGGCCCAG
TCTCTGGGCGTAGATGTCATCGTGACGGACCACCACTCTATGCCTGAGGAGCTGCCAAACGCCTATGCGATTGTCCATCC
GGAACATAGCGGAGCAGATTATCCTTTCAAGCATTTAGCCGGTTGTGGGGTGGCTTTTAAGCTGGCAACAGCCTTGCTGG
AAGAAGTCCAAGTTGAACTTTTGGACTTAGTGGCTATCGGTACCATTGCTGATATGGTCAGTCTGACGGGAGAGAATCGG
ATTTTGGTCAAATACGGCCTTTCCGTCCTCAAAAATACCCAGCGGGTGGGTCTTCAGGAGCTCTTCAAAATCGCAGGCAT
TCAGCCAGATGAGCTAGACGAAGAAACGGTTGGCTTCCAGCTTGCCCCCCGACTCAATGCACTGGGACGGCTGGATGATC
CCAATCCGGCTATTGAACTTTTGACAGGATTTGATGATGAGGAAGCTCGCGACATTGCGCTCATGGTCAACCAAAAAAAT
GATGAGCGTAAGGAAATCGTCCAGCAGATTTATGAAGAAGCACAAACCATGCTGGATCCTAAGAGACCAGTACAGGTGCT
GGCCAAGGAAGGTTGGAATCCTGGTGTGCTAGGGATTGTCGCTGGGCGCTTGCTGGAAGAGCTGCACCAGCCAGTTATAG
TGCTTAATATTGAGGCTGGTATCGCTAAGGGAAGCGCCCGCAGTATTGAAGCGGTCAATATTTTTGAGGCCTTGGACAGC
CACCGTGACCTCTTTCTAGCCTTTGGCGGGCACGCTGGAGCGGCTGGAATGACTCTTGAAGCAGACAAACTAGCAGAGCT
ATCTGATATCCTGACAGCCTACATCTTAGACAATGATTTGGATTTGACTGGAAAAACAACTCTCTATTTAGACGAGGAGT
TGCACCTGCCAGAACTGACCCTGGATACACTCAAAAGCTTTGAAAAACTTGCGCCTTTTGGTATGAACAATAAGAAGCCA
CTCTTTTACCTCAAGGACTTTAAAGTGGATAATGCTCGGACTATGGGGGCTGGCAATAGCCATCTCAAGCTGAAAATTTC
TCAGGAAGATGCATCTTTTGAAGTAGTAGCTTTTGGGCAAGGAAACCTGGCGACAGAGTTTGCCCAGACCAAGAATCTAG
AGCTAGCTGTCAGCCTCTCTGTCAATAAATGGAAGGGACAGACCAGTCTCCAGCTCATGCTGGTAGATGCTCGTGTGGAC
GGCGTACAGCTTTTCAATATCCGCAGCAAAAATGCGACGCTGCCTGATAAGGTTCCAGTCTTGCGTTTCACAGAGGAATT
GCCAGATTTGACAAATAGCAGAGCAGTTGTGGTTTATGACCTGCCTGATGATTTGCAGGTCTTGAAGAAGATTCTTCAGT
CTCAGAATTTCGATGCTATTTACTTTAAGAATGAGATTGCCAAATCTTACTATCTGACCGGCTATGGTACCCGTGAGCAA
TTTGCCAAACTCTACAAGACTATCTACCAGTTCCCCGAGTTTGACGTTCGCTATAAACTCAAAGAGTTGGCGGCTTACCT
GAAAATCGACCCGATTCTCTTGGTTAAAATGATTCAGATTTTTGAAGAGCTGGGCTTTGTCAGCATCACCGAAGGTGTCA
TGACAGTTAATAAAGAAGCAGAAAAGAAAGAAATTGAAAGCAGTCGTATTTACCAAGACCTCAAGCGCCTAGTCAAAGAG
CAAGAACTCATGGCTCTGGGCACTGTGCAGGAGATTTACGACTATCTCATGGATTGCTAG

Domains

Predicted by InterProScan.

RecJ OB domain (RecJ_OB)

(451-556)

DHH family (DHH)

(83-228)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(591-733)

DHHA1 domain (DHHA1)

(316-434)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

74.932

99.865

0.748
  recJ Bacillus subtilis subsp. subtilis str. 168

37.694

100

0.394