Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   HBA50_RS05095 Genome accession   NZ_CP050133
Coordinates   1034702..1035772 (+) Length   356 a.a.
NCBI ID   WP_045497357.1    Uniprot ID   -
Organism   Streptococcus cristatus ATCC 51100     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1029702..1040772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA50_RS05070 (HBA50_05070) - 1030401..1031099 (+) 699 WP_045497347.1 GntR family transcriptional regulator -
  HBA50_RS05075 (HBA50_05075) - 1031218..1031550 (+) 333 WP_005590307.1 putative DNA-binding protein -
  HBA50_RS05080 (HBA50_05080) ffh 1031606..1033174 (+) 1569 WP_045497350.1 signal recognition particle protein -
  HBA50_RS05085 (HBA50_05085) - 1033235..1034023 (+) 789 WP_045497353.1 alpha/beta hydrolase -
  HBA50_RS05090 (HBA50_05090) - 1034078..1034521 (+) 444 WP_045497355.1 MepB family protein -
  HBA50_RS05095 (HBA50_05095) xerS 1034702..1035772 (+) 1071 WP_045497357.1 tyrosine recombinase XerS Machinery gene
  HBA50_RS05100 (HBA50_05100) - 1035848..1036480 (-) 633 WP_045497359.1 ABC transporter ATP-binding protein -
  HBA50_RS05105 (HBA50_05105) - 1036482..1038491 (-) 2010 WP_045497362.1 DUF1430 domain-containing protein -
  HBA50_RS05110 (HBA50_05110) - 1038640..1039629 (-) 990 WP_045497365.1 lipoate--protein ligase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41272.36 Da        Isoelectric Point: 9.6661

>NTDB_id=376907 HBA50_RS05095 WP_045497357.1 1034702..1035772(+) (xerS) [Streptococcus cristatus ATCC 51100]
MRRELLLERIDKLKATMPWYILEYYQSKLAVPYSFTTLYEYLKEYDRFFNWVLESGITNASHIAEIPLSVLENMSKKDME
AFILYLRERPLLNANTTQNGVSQTTINRTLSALSSLYKYLTEEVENEQGEPYFYRNVMKKVATKKKKETLAARAENIKQK
LFLGDETEEFLQYIDTEYPKKLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVNLDLKDINLKMMVIEVTRKGGKRDS
VNVAAFAKSYLEEYLSIRSKRYKAEKTNTAFFLTEYRGTPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDKL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=376907 HBA50_RS05095 WP_045497357.1 1034702..1035772(+) (xerS) [Streptococcus cristatus ATCC 51100]
ATGAGACGTGAACTGTTATTAGAAAGAATTGATAAACTCAAGGCCACCATGCCCTGGTACATTCTGGAATATTACCAGTC
TAAGTTGGCAGTGCCTTATAGTTTTACAACCTTATACGAATATCTCAAAGAATATGATCGATTTTTTAACTGGGTGCTAG
AATCTGGCATAACAAATGCTTCGCATATTGCTGAGATTCCTCTCTCGGTCTTGGAAAACATGAGCAAGAAAGACATGGAG
GCCTTCATTCTGTATCTGCGCGAGCGACCGCTTCTAAATGCTAATACAACTCAAAACGGTGTTTCTCAGACAACCATTAA
CCGGACTCTTTCGGCTTTGTCCAGCCTCTACAAATATTTAACCGAGGAAGTTGAAAACGAGCAGGGTGAGCCCTACTTCT
ATCGAAATGTGATGAAAAAGGTTGCTACTAAGAAGAAAAAGGAAACTCTGGCTGCTCGTGCAGAGAATATTAAGCAGAAG
CTCTTTTTAGGGGATGAGACGGAAGAATTCCTCCAGTATATTGATACGGAGTACCCTAAGAAGCTCTCTAATCGTGCCCT
ATCTTCTTTTAACAAGAACAAAGAACGAGATTTAGCCATCATTGCCTTGCTGTTAGCCTCTGGTGTTCGTCTGTCTGAAG
CTGTCAATCTGGACCTGAAAGACATCAATCTCAAAATGATGGTCATTGAAGTGACAAGGAAAGGTGGAAAAAGAGACTCT
GTCAATGTTGCTGCCTTTGCCAAGTCCTATTTAGAAGAGTATTTAAGTATTCGGAGCAAGCGATACAAGGCCGAAAAGAC
TAATACAGCCTTCTTTTTGACTGAATACCGCGGCACTCCTAATCGAATCGATGCTTCCAGTGTCGAAAAAATGGTGGCCA
AGTATTCTGAGGACTTCAAGGTGCGAGTGACACCTCACAAACTCCGTCACACGCTTGCTACACGTTTATACGATGCAACC
AAATCTCAAGTTCTCGTCAGTCACCAGCTGGGACATGCTAGTACACAAGTTACTGACCTCTACACCCATATTGTCAATGA
TGAGCAAAAGAATGCTCTGGATAAGCTCTAG

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(188-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

89.888

100

0.899