Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   HBA50_RS02515 Genome accession   NZ_CP050133
Coordinates   487919..489895 (+) Length   658 a.a.
NCBI ID   WP_045500856.1    Uniprot ID   -
Organism   Streptococcus cristatus ATCC 51100     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 482919..494895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA50_RS02490 (HBA50_02490) serC 483445..484536 (+) 1092 WP_045500847.1 3-phosphoserine/phosphohydroxythreonine transaminase -
  HBA50_RS02495 (HBA50_02495) - 484549..485724 (+) 1176 WP_045500849.1 3-phosphoglycerate dehydrogenase family protein -
  HBA50_RS02500 (HBA50_02500) - 485859..486212 (+) 354 WP_045500851.1 arsenate reductase family protein -
  HBA50_RS02505 (HBA50_02505) msrB 486380..487315 (+) 936 WP_045500853.1 peptide-methionine (R)-S-oxide reductase MsrB -
  HBA50_RS02510 (HBA50_02510) - 487480..487722 (+) 243 WP_005592291.1 hypothetical protein -
  HBA50_RS02515 (HBA50_02515) recP/tkt 487919..489895 (+) 1977 WP_045500856.1 transketolase Machinery gene
  HBA50_RS02520 (HBA50_02520) yajC 490014..490349 (+) 336 WP_005591861.1 preprotein translocase subunit YajC -
  HBA50_RS02525 (HBA50_02525) - 490567..491316 (+) 750 WP_045500858.1 isoprenyl transferase -
  HBA50_RS02530 (HBA50_02530) - 491332..492135 (+) 804 WP_045500860.1 phosphatidate cytidylyltransferase -
  HBA50_RS02535 (HBA50_02535) eeP 492206..493462 (+) 1257 WP_045500863.1 RIP metalloprotease RseP Regulator

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 70978.66 Da        Isoelectric Point: 4.6348

>NTDB_id=376878 HBA50_RS02515 WP_045500856.1 487919..489895(+) (recP/tkt) [Streptococcus cristatus ATCC 51100]
MSQLSVNAIRFLGIDAIEKSKSGHPGVVMGAAPMAYDLFTKQLRINPEEPNWINRDRFVLSAGHGSMLLYALLHLSGFKD
VSMEEIKNFRQWGSKTPGHPEFGHTAGVDATTGPLGQGISTATGFAQAERFLAAKYNREGYPIFDHYTYVICGDGDLMEG
VSAEAASYAGLQKLDKLVVLYDSNDINLDGETKDSFTENVRARYEAYGWHTALVEDGTDIAAIDAAINEAKASGKPSLIE
VKTVIGYGSPNKQGTNAVHGAPLGAEEAEATRQALGWDYAPFEIPEEVYADYRTNVAERGAAAYDAWKQLVEDYKQAHPE
LAAEVTAIIAGQDPVEIKPEDFPVLENGFSQATRNSSQDALNAAAKVLPTFLGGSADLAHSNMTYIKEDGLQDDAHRLNR
NIQFGVREFAMGTILNGMALHGGLRVYGGTFFVFSDYVKAAVRLSALQGLPVTYVFTHDSIAVGEDGPTHEPIEHLAGLR
AIPNLTVLRPADARETQAAWYLALKSQSTPTALVLTRQNLTVEEGTDFDKVAKGAYVVYETGADFDTILLASGSEVNLAV
AAAKALAAEGAKIRVVSVPSTELFDAQDAAYKEEILPNAVRRRVAIEMAASQPWYKYVGLDGAVIGIDQFGASAPAGKVL
EEYGFTVEHVAEVVKNLE

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=376878 HBA50_RS02515 WP_045500856.1 487919..489895(+) (recP/tkt) [Streptococcus cristatus ATCC 51100]
ATGTCACAATTATCTGTTAATGCCATTCGCTTTTTAGGAATTGACGCAATTGAAAAGTCTAAGTCAGGTCACCCTGGTGT
CGTGATGGGTGCTGCGCCAATGGCTTACGACCTATTTACTAAACAACTGCGTATCAATCCAGAAGAGCCAAATTGGATTA
ACCGCGATCGCTTCGTTCTGTCTGCAGGACACGGCTCTATGTTGCTTTATGCCTTGCTCCATCTGTCTGGCTTTAAAGAT
GTCAGCATGGAGGAAATCAAAAACTTCCGCCAATGGGGCTCTAAGACACCAGGTCACCCAGAGTTTGGTCATACGGCTGG
AGTTGATGCGACGACTGGACCATTGGGACAAGGGATTTCTACAGCGACTGGATTTGCTCAGGCAGAGCGTTTCTTGGCTG
CCAAGTATAATCGTGAAGGCTACCCGATTTTTGACCATTACACTTATGTCATCTGTGGTGATGGCGATTTGATGGAGGGA
GTTTCAGCTGAGGCGGCTTCTTACGCTGGCCTGCAAAAGCTGGACAAGTTGGTTGTTCTCTACGATTCAAATGATATCAA
CTTGGATGGGGAAACTAAGGATTCCTTTACAGAAAATGTTCGTGCCCGCTATGAAGCCTATGGTTGGCATACTGCTTTAG
TCGAAGACGGAACGGATATTGCAGCGATTGATGCAGCTATCAATGAAGCGAAAGCTTCTGGCAAGCCATCTTTGATTGAA
GTTAAGACGGTTATCGGTTACGGTTCTCCAAACAAGCAAGGAACCAATGCAGTTCATGGTGCTCCTTTAGGAGCAGAAGA
AGCGGAAGCCACACGTCAAGCCTTGGGTTGGGACTATGCGCCATTTGAGATTCCTGAGGAAGTCTATGCAGATTACCGTA
CAAATGTGGCAGAGCGTGGTGCAGCGGCATACGATGCTTGGAAACAGCTGGTAGAGGACTACAAGCAAGCCCATCCAGAA
TTGGCAGCAGAAGTAACAGCTATCATTGCTGGTCAGGATCCAGTAGAAATCAAACCAGAAGACTTCCCAGTGCTTGAAAA
TGGCTTCTCTCAAGCGACTCGTAATTCTAGTCAGGATGCCCTCAATGCAGCAGCTAAGGTGCTTCCAACTTTTCTCGGCG
GTTCTGCTGACTTGGCTCATTCTAATATGACCTATATCAAGGAGGATGGCCTGCAAGATGATGCCCACCGTCTCAACCGC
AATATCCAATTTGGTGTGCGCGAGTTTGCTATGGGAACAATTCTCAACGGTATGGCGCTTCATGGTGGACTTCGCGTTTA
CGGTGGTACCTTCTTCGTCTTCTCAGATTATGTTAAGGCAGCTGTCCGTTTGTCTGCTCTGCAAGGTTTGCCAGTGACTT
ATGTCTTCACTCACGATTCAATTGCGGTTGGTGAAGACGGTCCGACTCATGAGCCGATTGAGCACTTGGCTGGTCTGCGT
GCGATTCCAAACTTGACTGTCCTTCGCCCAGCAGATGCACGTGAAACCCAGGCAGCTTGGTATTTAGCCCTTAAGAGCCA
ATCTACTCCGACTGCTCTGGTCTTGACCCGTCAAAATCTGACAGTCGAAGAAGGCACAGACTTTGACAAGGTCGCTAAAG
GTGCTTATGTAGTCTACGAAACAGGAGCAGATTTCGATACTATCTTGTTGGCTTCTGGTTCTGAGGTTAATTTGGCTGTT
GCAGCTGCTAAAGCACTTGCAGCAGAAGGCGCTAAAATCCGCGTGGTCAGCGTGCCATCAACAGAGCTTTTTGACGCTCA
AGATGCAGCCTACAAAGAAGAAATTCTGCCAAATGCAGTTCGTCGCCGTGTAGCGATTGAGATGGCAGCTAGCCAGCCTT
GGTACAAGTATGTCGGTCTAGACGGTGCAGTTATCGGAATCGACCAGTTCGGTGCATCTGCTCCAGCAGGCAAGGTTCTG
GAAGAATACGGCTTTACAGTTGAGCACGTAGCAGAAGTTGTTAAAAATCTTGAATAA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(545-650)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(3-334)

Transketolase, pyrimidine binding domain (Transket_pyr)

(352-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

80.518

99.848

0.804