Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   HAV35_RS11170 Genome accession   NZ_CP050120
Coordinates   2221553..2221930 (+) Length   125 a.a.
NCBI ID   WP_010887191.1    Uniprot ID   Q9RWW9
Organism   Deinococcus radiodurans strain BND-54     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2216553..2226930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HAV35_RS11150 (HAV35_11155) - 2216954..2217706 (-) 753 WP_010887195.1 NUDIX hydrolase -
  HAV35_RS11155 (HAV35_11160) dnaB 2217703..2219049 (-) 1347 WP_010887194.1 replicative DNA helicase -
  HAV35_RS11160 (HAV35_11165) pilV 2219483..2219959 (+) 477 WP_034349477.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  HAV35_RS11165 (HAV35_11170) - 2220002..2221186 (-) 1185 WP_162177563.1 HTTM domain-containing protein -
  HAV35_RS11170 (HAV35_11175) pilV 2221553..2221930 (+) 378 WP_010887191.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  HAV35_RS11175 (HAV35_11180) - 2221914..2222189 (-) 276 WP_027479532.1 hypothetical protein -
  HAV35_RS11180 (HAV35_11185) - 2222186..2222953 (-) 768 WP_010887189.1 sulfite exporter TauE/SafE family protein -
  HAV35_RS11185 (HAV35_11190) - 2223030..2223713 (-) 684 WP_010887188.1 SDR family oxidoreductase -
  HAV35_RS11190 (HAV35_11195) - 2223818..2224279 (+) 462 WP_341765338.1 glycerophosphodiester phosphodiesterase -
  HAV35_RS16800 - 2224294..2224494 (+) 201 WP_341765339.1 glycerophosphodiester phosphodiesterase family protein -
  HAV35_RS11195 (HAV35_11200) - 2224519..2225313 (+) 795 WP_034349478.1 DUF72 domain-containing protein -
  HAV35_RS11200 (HAV35_11205) - 2225524..2226843 (+) 1320 WP_162177565.1 hypothetical protein -

Sequence

Protein


Download         Length: 125 a.a.        Molecular weight: 13107.95 Da        Isoelectric Point: 5.7683

>NTDB_id=376842 HAV35_RS11170 WP_010887191.1 2221553..2221930(+) (pilV) [Deinococcus radiodurans strain BND-54]
MQKATEAFTLIELLVVMTIIAILISVLVPSLAGARSKAYDSATTSYLRHCASALEISRDDLGVLPSPPPTSCEDPALGVN
AQSKPASVKQSQVTVTSSGTAYTISALSQSGKTFTYDQGGFREIP

Nucleotide


Download         Length: 378 bp        

>NTDB_id=376842 HAV35_RS11170 WP_010887191.1 2221553..2221930(+) (pilV) [Deinococcus radiodurans strain BND-54]
ATGCAAAAGGCCACTGAGGCATTCACACTGATCGAGCTTCTCGTAGTGATGACGATAATCGCCATTCTCATCTCTGTGCT
TGTACCTAGCCTCGCGGGCGCCAGAAGTAAAGCTTATGACAGCGCCACGACATCCTACCTTCGCCATTGCGCCTCAGCGC
TTGAAATCTCACGAGACGATCTAGGAGTTTTGCCAAGTCCCCCACCAACCAGTTGTGAGGATCCAGCACTGGGTGTCAAT
GCGCAGAGCAAGCCGGCATCGGTCAAACAATCACAAGTTACGGTTACCAGCAGTGGCACTGCTTATACCATTAGTGCTCT
TTCACAAAGTGGCAAGACCTTTACCTACGATCAGGGTGGCTTTAGAGAAATCCCTTGA

Domains

Predicted by InterProScan.

Pilin A4 (PilA4)

(40-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9RWW9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.857

95.2

0.408