Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   HAV35_RS09780 Genome accession   NZ_CP050120
Coordinates   1940953..1941687 (-) Length   244 a.a.
NCBI ID   WP_010887465.1    Uniprot ID   Q9RW50
Organism   Deinococcus radiodurans strain BND-54     
Function   homologous recombination; promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1935953..1946687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HAV35_RS09750 (HAV35_09755) rpmE 1935971..1936192 (-) 222 WP_010887471.1 50S ribosomal protein L31 -
  HAV35_RS09755 (HAV35_09760) - 1936248..1937453 (-) 1206 WP_051618821.1 amidohydrolase family protein -
  HAV35_RS09760 (HAV35_09765) - 1937555..1938394 (-) 840 WP_010887469.1 ROK family protein -
  HAV35_RS09765 (HAV35_09770) - 1938489..1939229 (+) 741 WP_027479969.1 SDR family oxidoreductase -
  HAV35_RS09770 (HAV35_09775) - 1939474..1940370 (+) 897 WP_034350357.1 alpha/beta hydrolase -
  HAV35_RS09775 (HAV35_09780) - 1940386..1940784 (+) 399 WP_010887466.1 hypothetical protein -
  HAV35_RS09780 (HAV35_09785) recO 1940953..1941687 (-) 735 WP_010887465.1 DNA repair protein RecO Machinery gene
  HAV35_RS09785 (HAV35_09790) - 1941876..1942268 (+) 393 WP_027479971.1 hypothetical protein -
  HAV35_RS09790 (HAV35_09795) - 1942464..1942877 (+) 414 WP_010887463.1 hypothetical protein -
  HAV35_RS09795 (HAV35_09800) - 1942926..1943390 (+) 465 WP_010887462.1 MgtC/SapB family protein -
  HAV35_RS09800 (HAV35_09805) - 1943455..1944171 (+) 717 WP_051618822.1 GntR family transcriptional regulator -
  HAV35_RS09805 (HAV35_09810) - 1944215..1945147 (+) 933 WP_010887460.1 proline dehydrogenase -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26343.46 Da        Isoelectric Point: 9.2272

>NTDB_id=376834 HAV35_RS09780 WP_010887465.1 1940953..1941687(-) (recO) [Deinococcus radiodurans strain BND-54]
MRSRTANRSGIVIRRRVTPAGDIIVTLLTPQGKLKAIARGGVKGPLSSSLNLFHHVGVQVYQGPHNDLASVKQAVLEGAL
PTLAEPERYAFAHLMAEFADALFQEGEFSEQAFDLFAASLRGVAHQPDPEWVALVMSYKLLGLAGVIPQTARCARCGAPD
PEHPDPLGGQLLCSKCAALPPYPPAVLDFLRHAVRRTVRASFEQPVPSADRPALWRALEKFVTVQVGGVHSWRQLVPSGV
PVLS

Nucleotide


Download         Length: 735 bp        

>NTDB_id=376834 HAV35_RS09780 WP_010887465.1 1940953..1941687(-) (recO) [Deinococcus radiodurans strain BND-54]
ATGCGCTCACGCACCGCCAACCGCAGCGGCATCGTCATCCGCCGCCGGGTGACGCCTGCCGGCGACATCATCGTCACGCT
GCTGACCCCCCAGGGCAAGCTCAAGGCCATCGCGCGTGGCGGGGTCAAGGGGCCGCTGTCGAGCAGCCTCAACCTCTTTC
ACCATGTTGGGGTGCAGGTGTACCAGGGGCCGCACAACGACCTTGCCAGCGTGAAACAGGCGGTGCTGGAGGGCGCCCTG
CCCACCCTGGCCGAGCCTGAGCGCTACGCCTTCGCGCACCTGATGGCCGAATTTGCCGACGCGCTGTTTCAGGAAGGCGA
GTTCTCCGAGCAGGCCTTCGACCTCTTCGCCGCCTCGCTGCGCGGCGTGGCGCACCAGCCCGACCCCGAGTGGGTGGCGC
TCGTCATGAGCTACAAGCTGCTCGGACTGGCCGGGGTGATCCCCCAGACCGCTCGCTGCGCCCGTTGCGGCGCGCCCGAC
CCTGAGCACCCCGACCCCCTCGGCGGACAACTGCTGTGCAGCAAGTGCGCGGCCCTCCCGCCCTACCCGCCCGCCGTCCT
CGACTTCCTGCGCCACGCCGTGCGGCGCACCGTCCGCGCCAGCTTTGAGCAGCCGGTGCCGAGTGCCGACCGCCCCGCGC
TGTGGAGAGCGCTGGAAAAGTTCGTCACGGTGCAGGTCGGCGGCGTCCACAGCTGGCGGCAACTCGTCCCAAGCGGCGTG
CCGGTGCTGAGCTAG

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(86-228)

Recombination protein O N terminal (RecO_N)

(6-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 1U5K
  PDB 1W3S
  PDB 2V1C
  PDB 4JCV

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

100

100

1