Detailed information
Bioinformatically predicted
Overview
| Name | recF | Type | Machinery gene |
| Locus tag | HAV35_RS08415 | Genome accession | NZ_CP050120 |
| Coordinates | 1671229..1672308 (+) | Length | 359 a.a. |
| NCBI ID | WP_010887732.1 | Uniprot ID | Q9RVE0 |
| Organism | Deinococcus radiodurans strain BND-54 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1666229..1677308
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HAV35_RS08385 (HAV35_08390) | - | 1666315..1666545 (+) | 231 | WP_010887738.1 | hypothetical protein | - |
| HAV35_RS08390 (HAV35_08395) | - | 1666648..1666929 (+) | 282 | WP_034349694.1 | YiaA/YiaB family inner membrane protein | - |
| HAV35_RS08395 (HAV35_08400) | trpS | 1667090..1668115 (-) | 1026 | WP_010887736.1 | tryptophan--tRNA ligase | - |
| HAV35_RS08400 (HAV35_08405) | - | 1668687..1669196 (-) | 510 | WP_166466077.1 | hypothetical protein | - |
| HAV35_RS08405 (HAV35_08410) | - | 1669271..1669756 (+) | 486 | WP_010887734.1 | hypothetical protein | - |
| HAV35_RS08410 (HAV35_08415) | - | 1669993..1671063 (-) | 1071 | WP_010887733.1 | diguanylate cyclase | - |
| HAV35_RS08415 (HAV35_08420) | recF | 1671229..1672308 (+) | 1080 | WP_010887732.1 | DNA replication and repair protein RecF | Machinery gene |
| HAV35_RS08420 (HAV35_08425) | - | 1672305..1673171 (+) | 867 | WP_010887731.1 | DUF721 domain-containing protein | - |
| HAV35_RS08425 (HAV35_08430) | fni | 1673324..1674184 (+) | 861 | WP_010887730.1 | type 2 isopentenyl-diphosphate Delta-isomerase | - |
| HAV35_RS08430 (HAV35_08435) | alr | 1674349..1675404 (-) | 1056 | WP_027479629.1 | alanine racemase | - |
| HAV35_RS08435 (HAV35_08440) | - | 1675451..1676206 (+) | 756 | WP_010887728.1 | class I SAM-dependent methyltransferase | - |
Sequence
Protein
Download Length: 359 a.a. Molecular weight: 39141.03 Da Isoelectric Point: 5.0870
>NTDB_id=376828 HAV35_RS08415 WP_010887732.1 1671229..1672308(+) (recF) [Deinococcus radiodurans strain BND-54]
MGDVRLSALSTLNYRNLAPGTLNFPEGVTGIYGENGAGKTNLLEAAYLALTGQTDAPRIEQLIQAGETEAYVRADLQQGG
SLSIQEVGLGRGRRQLKVDGVRARTGDLPRGGAVWIRPEDSELVFGPPSGRRAYLDSLLSRLSARYGEQLSRYERTVSQR
NAALRGGEEWAMHVWDDVLLKLGTEIMLFRRRALTRLDELAREANAQLGSRKTLALTLTESTSPETYAADLRGRRAEELA
RGSTVTGPHRDDLLLTLGDFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASV
PQAIVTGTELAPGAALTLRAQAGRFTPVADEEMQAEGTA
MGDVRLSALSTLNYRNLAPGTLNFPEGVTGIYGENGAGKTNLLEAAYLALTGQTDAPRIEQLIQAGETEAYVRADLQQGG
SLSIQEVGLGRGRRQLKVDGVRARTGDLPRGGAVWIRPEDSELVFGPPSGRRAYLDSLLSRLSARYGEQLSRYERTVSQR
NAALRGGEEWAMHVWDDVLLKLGTEIMLFRRRALTRLDELAREANAQLGSRKTLALTLTESTSPETYAADLRGRRAEELA
RGSTVTGPHRDDLLLTLGDFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASV
PQAIVTGTELAPGAALTLRAQAGRFTPVADEEMQAEGTA
Nucleotide
Download Length: 1080 bp
>NTDB_id=376828 HAV35_RS08415 WP_010887732.1 1671229..1672308(+) (recF) [Deinococcus radiodurans strain BND-54]
ATGGGGGATGTGCGTCTCTCGGCCCTGTCTACCCTGAATTACCGGAATCTTGCGCCTGGGACGCTGAATTTCCCGGAAGG
CGTGACCGGGATTTATGGGGAGAACGGAGCTGGCAAGACCAACCTGCTCGAGGCCGCCTACCTCGCGCTGACCGGACAGA
CCGACGCGCCGCGTATCGAGCAACTGATTCAAGCGGGCGAGACCGAGGCGTATGTGCGGGCCGATTTGCAGCAGGGCGGC
AGCCTCAGCATTCAGGAAGTGGGGCTGGGGCGCGGGCGGCGGCAACTGAAGGTGGACGGCGTGCGCGCCCGGACCGGCGA
CCTGCCGCGCGGCGGAGCGGTGTGGATTCGCCCGGAAGACAGCGAACTGGTGTTCGGGCCGCCCTCGGGACGCCGGGCGT
ATCTGGACTCGCTGCTCTCGCGCCTCAGCGCCCGCTACGGCGAACAACTCTCGCGCTACGAGCGTACGGTGTCGCAGCGC
AACGCGGCCCTGCGCGGCGGCGAGGAATGGGCGATGCACGTCTGGGACGACGTCCTGCTCAAGCTCGGCACCGAAATCAT
GCTGTTTCGTCGCCGGGCGCTCACGCGGCTCGACGAACTGGCGCGCGAGGCGAACGCCCAGCTCGGCAGCCGCAAGACGC
TCGCGCTTACGCTGACCGAGAGCACCTCGCCCGAAACCTACGCCGCCGACCTGCGGGGCCGCCGCGCCGAGGAATTGGCA
CGCGGCTCCACCGTCACCGGCCCGCACCGCGACGACCTGCTGCTCACCCTGGGCGACTTTCCAGCGAGCGACTATGCCAG
CCGGGGCGAAGGCCGCACTGTCGCGCTCGCGCTGCGCCGCGCCGAACTCGAACTGCTGCGCGAGAAATTCGGCGAAGACC
CCGTTTTGCTCCTCGACGACTTCACCGCCGAACTCGACCCCCACCGCCGCCAGTACCTGCTCGACCTCGCCGCCAGCGTG
CCGCAGGCCATCGTGACCGGCACCGAACTCGCTCCCGGCGCGGCGCTGACGTTGCGGGCGCAGGCGGGGCGCTTTACTCC
AGTGGCAGATGAGGAGATGCAAGCGGAGGGCACGGCGTGA
ATGGGGGATGTGCGTCTCTCGGCCCTGTCTACCCTGAATTACCGGAATCTTGCGCCTGGGACGCTGAATTTCCCGGAAGG
CGTGACCGGGATTTATGGGGAGAACGGAGCTGGCAAGACCAACCTGCTCGAGGCCGCCTACCTCGCGCTGACCGGACAGA
CCGACGCGCCGCGTATCGAGCAACTGATTCAAGCGGGCGAGACCGAGGCGTATGTGCGGGCCGATTTGCAGCAGGGCGGC
AGCCTCAGCATTCAGGAAGTGGGGCTGGGGCGCGGGCGGCGGCAACTGAAGGTGGACGGCGTGCGCGCCCGGACCGGCGA
CCTGCCGCGCGGCGGAGCGGTGTGGATTCGCCCGGAAGACAGCGAACTGGTGTTCGGGCCGCCCTCGGGACGCCGGGCGT
ATCTGGACTCGCTGCTCTCGCGCCTCAGCGCCCGCTACGGCGAACAACTCTCGCGCTACGAGCGTACGGTGTCGCAGCGC
AACGCGGCCCTGCGCGGCGGCGAGGAATGGGCGATGCACGTCTGGGACGACGTCCTGCTCAAGCTCGGCACCGAAATCAT
GCTGTTTCGTCGCCGGGCGCTCACGCGGCTCGACGAACTGGCGCGCGAGGCGAACGCCCAGCTCGGCAGCCGCAAGACGC
TCGCGCTTACGCTGACCGAGAGCACCTCGCCCGAAACCTACGCCGCCGACCTGCGGGGCCGCCGCGCCGAGGAATTGGCA
CGCGGCTCCACCGTCACCGGCCCGCACCGCGACGACCTGCTGCTCACCCTGGGCGACTTTCCAGCGAGCGACTATGCCAG
CCGGGGCGAAGGCCGCACTGTCGCGCTCGCGCTGCGCCGCGCCGAACTCGAACTGCTGCGCGAGAAATTCGGCGAAGACC
CCGTTTTGCTCCTCGACGACTTCACCGCCGAACTCGACCCCCACCGCCGCCAGTACCTGCTCGACCTCGCCGCCAGCGTG
CCGCAGGCCATCGTGACCGGCACCGAACTCGCTCCCGGCGCGGCGCTGACGTTGCGGGCGCAGGCGGGGCGCTTTACTCC
AGTGGCAGATGAGGAGATGCAAGCGGAGGGCACGGCGTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| recF | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
100 |
100 |
1 |