Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutS/mutS2   Type   Machinery gene
Locus tag   HAV23_RS12765 Genome accession   NZ_CP050116
Coordinates   2557771..2560056 (-) Length   761 a.a.
NCBI ID   WP_027479827.1    Uniprot ID   -
Organism   Deinococcus radiodurans strain BNK-50     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2552771..2565056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HAV23_RS12750 (HAV23_12755) clpX 2553030..2554241 (+) 1212 WP_010888606.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  HAV23_RS12755 (HAV23_12760) lon 2554388..2556829 (+) 2442 WP_027479826.1 endopeptidase La -
  HAV23_RS12760 (HAV23_12765) - 2556882..2557766 (-) 885 WP_010888608.1 GNAT family N-acetyltransferase -
  HAV23_RS12765 (HAV23_12770) mutS/mutS2 2557771..2560056 (-) 2286 WP_027479827.1 endonuclease MutS2 Machinery gene
  HAV23_RS12770 (HAV23_12775) - 2560231..2561067 (+) 837 WP_010888610.1 hypothetical protein -
  HAV23_RS12775 (HAV23_12780) - 2561096..2561998 (-) 903 WP_027479828.1 GNAT family N-acetyltransferase -
  HAV23_RS12780 (HAV23_12785) - 2562085..2562552 (+) 468 WP_027479829.1 DIP1984 family protein -
  HAV23_RS12785 (HAV23_12790) - 2562857..2563813 (+) 957 WP_027479830.1 complex I NDUFA9 subunit family protein -
  HAV23_RS12790 (HAV23_12795) - 2563867..2564382 (-) 516 WP_027479831.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 761 a.a.        Molecular weight: 83569.36 Da        Isoelectric Point: 6.8001

>NTDB_id=376799 HAV23_RS12765 WP_027479827.1 2557771..2560056(-) (mutS/mutS2) [Deinococcus radiodurans strain BNK-50]
MAFDSRALSALDFPRITAALADRAATSLGRERALALRPSDDAYRIAQELDEVEDALFGVSLSLGGIHDIRDIHARAGEGR
VLSGQDLLNAAYSLDGAMTVKRAIETNSRGPLRDVATGLGDHSELVRRVLQSLDREGNVRDDASPRLRDLRKRIEPLRGR
IREKLTQTLEKWSDVLQEHLVTIRRDRYVLPVLASRVGSVQGIIVDASATGQTYFVEPAAVTQLNNELTRLILDEEAEVR
RILTELSALLAQDSAVPMTLATIGELDLIASKAKLARDWRLNRPEAAPDGLYDLHEARHPLIENPVANDIQLGETKLLLI
TGPNMGGKTATLKTLGLAVLMHQCGLYVAAASARLPVVRDILVDIGDEQSIEASLSTFASHLKHLRYVLRHAAPDTLVLV
DELGSGTDPDEGAALAQSLIETLLEQDARGIITSHLSPLKLFALETPGLKNASMGFAVGTLAPTYQLQVGQPGRSYALAI
ANRMGLPRDVLSRAEELLGPEAGLMERMLSELERERRELGEQLETAAAARREAEAELGRVRHERETLETRRNEMLAEASQ
KAESLYADAVERVRTLRARAQEDSARPRVMQELRELRVQAQKARPAPPKREERGDPIRVGNKVNVPAYGAQGQVLEMRGD
DLVVQLGLMKVGVKRRDVRLVQETKVKAPKPSFVGSAPSRFDNELQLRGLSVEAAVEELRAAIAEARALKETPLRVVHGK
GMGVLRRTLRDYLKTDKNVESFHDAEANQGGHGVTIVNVKR

Nucleotide


Download         Length: 2286 bp        

>NTDB_id=376799 HAV23_RS12765 WP_027479827.1 2557771..2560056(-) (mutS/mutS2) [Deinococcus radiodurans strain BNK-50]
ATGGCTTTCGATTCCCGCGCTCTTTCTGCACTTGATTTTCCGCGTATTACTGCGGCCCTGGCCGACCGCGCCGCCACCTC
GCTGGGGCGAGAACGCGCCCTGGCCCTGCGCCCGAGCGACGACGCCTACCGCATCGCTCAGGAACTCGACGAGGTGGAAG
ACGCCTTGTTCGGCGTCAGCCTAAGTCTGGGAGGCATTCACGACATCCGCGACATCCATGCCCGCGCCGGGGAAGGCCGG
GTGCTGAGCGGGCAAGACCTGCTCAACGCCGCCTACTCGCTCGACGGGGCGATGACGGTCAAGCGGGCCATCGAGACCAA
TTCACGCGGGCCACTGCGCGACGTGGCGACGGGGCTGGGCGACCACTCCGAACTGGTGCGGCGGGTGCTGCAAAGCCTGG
ACCGCGAGGGCAACGTACGCGACGACGCCTCGCCCCGGCTGCGTGACCTGCGCAAGCGCATCGAGCCGCTGCGGGGGCGC
ATCCGCGAAAAGCTGACGCAGACGCTGGAAAAGTGGTCGGACGTGTTGCAGGAACACCTCGTCACCATTCGCCGCGACCG
CTACGTGCTGCCGGTGCTGGCGAGCCGGGTGGGCAGCGTGCAGGGCATCATCGTGGACGCTTCGGCCACCGGGCAGACCT
ATTTCGTGGAGCCCGCCGCCGTCACGCAGCTCAACAACGAGCTGACCCGCCTGATTCTGGACGAGGAAGCCGAGGTGCGG
CGGATTCTGACCGAGCTGTCGGCCCTGCTCGCGCAGGACAGTGCCGTGCCGATGACCCTGGCGACGATTGGCGAACTCGA
CCTGATTGCGTCGAAGGCCAAACTCGCCCGCGACTGGCGGCTCAACCGCCCCGAGGCAGCCCCGGACGGGCTGTACGATC
TGCACGAAGCCCGACACCCGCTGATCGAAAACCCCGTCGCCAATGATATTCAGCTCGGTGAGACCAAACTGCTGCTCATC
ACCGGCCCCAACATGGGCGGCAAGACAGCGACCCTCAAAACGCTGGGCCTCGCCGTGCTGATGCACCAATGCGGACTGTA
CGTGGCGGCGGCCTCGGCGCGGTTGCCCGTCGTGCGCGACATTCTGGTGGACATCGGGGACGAGCAGAGCATCGAGGCGA
GTCTTTCAACCTTTGCCTCTCACCTCAAGCACCTGCGCTACGTGCTGCGGCACGCGGCCCCCGATACCTTGGTGCTGGTG
GACGAACTCGGCAGCGGCACCGACCCCGACGAGGGCGCGGCGCTGGCGCAAAGCCTCATTGAAACGCTGTTGGAGCAGGA
CGCACGCGGCATCATCACCTCGCACCTCTCGCCGCTCAAGCTGTTCGCGCTGGAAACGCCGGGCCTGAAAAACGCCAGCA
TGGGCTTCGCAGTCGGTACGCTGGCACCCACCTATCAGCTCCAGGTGGGGCAGCCGGGCCGCTCCTACGCGCTGGCGATT
GCCAACCGCATGGGGCTGCCGCGTGACGTGCTGAGCCGCGCCGAGGAGCTGCTGGGGCCGGAAGCGGGCCTGATGGAGCG
GATGCTGAGTGAGCTGGAGCGCGAGCGCCGCGAACTCGGCGAGCAACTCGAAACCGCCGCTGCCGCCCGCCGCGAGGCCG
AGGCCGAACTGGGCCGGGTGCGCCACGAGCGAGAAACGCTCGAAACCCGCCGGAATGAGATGCTGGCCGAGGCGTCCCAG
AAGGCCGAAAGCCTCTATGCCGACGCTGTGGAACGTGTGCGGACCCTGCGCGCCCGGGCCCAGGAAGACAGCGCTCGCCC
CCGCGTGATGCAGGAGCTGCGCGAACTGCGGGTGCAGGCGCAAAAAGCCCGCCCCGCGCCGCCCAAGCGCGAGGAACGCG
GTGACCCCATCCGGGTGGGTAACAAGGTGAACGTGCCGGCCTACGGTGCTCAGGGACAGGTGCTGGAGATGCGCGGTGAC
GACCTCGTAGTGCAGCTCGGCCTGATGAAAGTCGGCGTCAAGCGGCGCGACGTGCGGCTGGTGCAGGAAACGAAGGTCAA
GGCGCCCAAGCCCAGCTTTGTCGGCAGCGCCCCGAGCCGCTTCGACAACGAACTGCAACTGCGCGGCCTGAGCGTGGAGG
CGGCGGTGGAAGAGCTGCGCGCCGCGATTGCCGAGGCCCGCGCGCTGAAAGAAACCCCGCTGCGGGTGGTTCACGGCAAA
GGCATGGGCGTGCTGCGCCGCACCCTGCGCGACTACCTCAAGACCGACAAGAACGTGGAGTCCTTCCACGACGCCGAAGC
CAATCAGGGCGGGCACGGCGTAACGATTGTGAACGTAAAGCGCTGA

Domains

Predicted by InterProScan.

Smr domain (Smr)

(685-760)

MutS domain V (MutS_V)

(318-497)

MutS2 and Smr-associated SH3 domain (MSSS)

(619-658)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutS/mutS2 Bacillus subtilis subsp. subtilis str. 168

34.766

100

0.361