Detailed information
Bioinformatically predicted
Overview
| Name | recF | Type | Machinery gene |
| Locus tag | HAV23_RS08375 | Genome accession | NZ_CP050116 |
| Coordinates | 1658132..1659211 (-) | Length | 359 a.a. |
| NCBI ID | WP_010887732.1 | Uniprot ID | Q9RVE0 |
| Organism | Deinococcus radiodurans strain BNK-50 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1653132..1664211
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HAV23_RS08355 (HAV23_08355) | - | 1654234..1654989 (-) | 756 | WP_010887728.1 | class I SAM-dependent methyltransferase | - |
| HAV23_RS08360 (HAV23_08360) | alr | 1655036..1656091 (+) | 1056 | WP_027479629.1 | alanine racemase | - |
| HAV23_RS08365 (HAV23_08365) | fni | 1656256..1657140 (-) | 885 | WP_227086026.1 | type 2 isopentenyl-diphosphate Delta-isomerase | - |
| HAV23_RS08370 (HAV23_08370) | - | 1657269..1658135 (-) | 867 | WP_010887731.1 | DUF721 domain-containing protein | - |
| HAV23_RS08375 (HAV23_08375) | recF | 1658132..1659211 (-) | 1080 | WP_010887732.1 | DNA replication and repair protein RecF | Machinery gene |
| HAV23_RS08380 (HAV23_08380) | - | 1659377..1660447 (+) | 1071 | WP_010887733.1 | diguanylate cyclase | - |
| HAV23_RS08385 (HAV23_08385) | - | 1660641..1661168 (-) | 528 | WP_166479968.1 | hypothetical protein | - |
| HAV23_RS08390 (HAV23_08390) | - | 1661243..1661737 (+) | 495 | WP_034349604.1 | hypothetical protein | - |
| HAV23_RS08395 (HAV23_08395) | trpS | 1662325..1663350 (+) | 1026 | WP_010887736.1 | tryptophan--tRNA ligase | - |
| HAV23_RS08400 (HAV23_08400) | - | 1663511..1663792 (-) | 282 | WP_034349694.1 | YiaA/YiaB family inner membrane protein | - |
| HAV23_RS08405 (HAV23_08405) | - | 1663895..1664125 (-) | 231 | WP_010887738.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 359 a.a. Molecular weight: 39141.03 Da Isoelectric Point: 5.0870
>NTDB_id=376780 HAV23_RS08375 WP_010887732.1 1658132..1659211(-) (recF) [Deinococcus radiodurans strain BNK-50]
MGDVRLSALSTLNYRNLAPGTLNFPEGVTGIYGENGAGKTNLLEAAYLALTGQTDAPRIEQLIQAGETEAYVRADLQQGG
SLSIQEVGLGRGRRQLKVDGVRARTGDLPRGGAVWIRPEDSELVFGPPSGRRAYLDSLLSRLSARYGEQLSRYERTVSQR
NAALRGGEEWAMHVWDDVLLKLGTEIMLFRRRALTRLDELAREANAQLGSRKTLALTLTESTSPETYAADLRGRRAEELA
RGSTVTGPHRDDLLLTLGDFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASV
PQAIVTGTELAPGAALTLRAQAGRFTPVADEEMQAEGTA
MGDVRLSALSTLNYRNLAPGTLNFPEGVTGIYGENGAGKTNLLEAAYLALTGQTDAPRIEQLIQAGETEAYVRADLQQGG
SLSIQEVGLGRGRRQLKVDGVRARTGDLPRGGAVWIRPEDSELVFGPPSGRRAYLDSLLSRLSARYGEQLSRYERTVSQR
NAALRGGEEWAMHVWDDVLLKLGTEIMLFRRRALTRLDELAREANAQLGSRKTLALTLTESTSPETYAADLRGRRAEELA
RGSTVTGPHRDDLLLTLGDFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASV
PQAIVTGTELAPGAALTLRAQAGRFTPVADEEMQAEGTA
Nucleotide
Download Length: 1080 bp
>NTDB_id=376780 HAV23_RS08375 WP_010887732.1 1658132..1659211(-) (recF) [Deinococcus radiodurans strain BNK-50]
ATGGGGGATGTGCGTCTCTCGGCCCTGTCTACCCTGAATTACCGGAATCTTGCGCCTGGGACGCTGAATTTCCCGGAAGG
CGTGACCGGGATTTATGGGGAGAACGGAGCTGGCAAGACCAACCTGCTCGAGGCCGCCTACCTCGCGCTGACCGGACAGA
CCGACGCGCCGCGTATCGAGCAACTGATTCAAGCGGGCGAGACCGAGGCGTATGTGCGGGCCGATTTGCAGCAGGGCGGC
AGCCTCAGCATTCAGGAAGTGGGGCTGGGGCGCGGGCGGCGGCAACTGAAGGTGGACGGCGTGCGCGCCCGGACCGGCGA
CCTGCCGCGCGGCGGAGCGGTGTGGATTCGCCCGGAAGACAGCGAACTGGTGTTCGGGCCGCCCTCGGGACGCCGGGCGT
ATCTGGACTCGCTGCTCTCGCGCCTCAGCGCCCGCTACGGCGAACAACTCTCGCGCTACGAGCGTACGGTGTCGCAGCGC
AACGCGGCCCTGCGCGGCGGCGAGGAATGGGCGATGCACGTCTGGGACGACGTCCTGCTCAAGCTCGGCACCGAAATCAT
GCTGTTTCGTCGCCGGGCGCTCACGCGGCTCGACGAACTGGCGCGCGAGGCGAACGCCCAGCTCGGCAGCCGCAAGACGC
TCGCGCTTACGCTGACCGAGAGCACCTCGCCCGAAACCTACGCCGCCGACCTGCGGGGCCGCCGCGCCGAGGAATTGGCA
CGCGGCTCCACCGTCACCGGCCCGCACCGCGACGACCTGCTGCTCACCCTGGGCGACTTTCCAGCGAGCGACTATGCCAG
CCGGGGCGAAGGCCGCACTGTCGCGCTCGCGCTGCGCCGCGCCGAACTCGAACTGCTGCGCGAGAAATTCGGCGAAGACC
CCGTTTTGCTCCTCGACGACTTCACCGCCGAACTCGACCCCCACCGCCGCCAGTACCTGCTCGACCTCGCCGCCAGCGTG
CCGCAGGCCATCGTGACCGGCACCGAACTCGCTCCCGGCGCGGCGCTGACGTTGCGGGCGCAGGCGGGGCGCTTTACTCC
AGTGGCAGATGAGGAGATGCAAGCGGAGGGCACGGCGTGA
ATGGGGGATGTGCGTCTCTCGGCCCTGTCTACCCTGAATTACCGGAATCTTGCGCCTGGGACGCTGAATTTCCCGGAAGG
CGTGACCGGGATTTATGGGGAGAACGGAGCTGGCAAGACCAACCTGCTCGAGGCCGCCTACCTCGCGCTGACCGGACAGA
CCGACGCGCCGCGTATCGAGCAACTGATTCAAGCGGGCGAGACCGAGGCGTATGTGCGGGCCGATTTGCAGCAGGGCGGC
AGCCTCAGCATTCAGGAAGTGGGGCTGGGGCGCGGGCGGCGGCAACTGAAGGTGGACGGCGTGCGCGCCCGGACCGGCGA
CCTGCCGCGCGGCGGAGCGGTGTGGATTCGCCCGGAAGACAGCGAACTGGTGTTCGGGCCGCCCTCGGGACGCCGGGCGT
ATCTGGACTCGCTGCTCTCGCGCCTCAGCGCCCGCTACGGCGAACAACTCTCGCGCTACGAGCGTACGGTGTCGCAGCGC
AACGCGGCCCTGCGCGGCGGCGAGGAATGGGCGATGCACGTCTGGGACGACGTCCTGCTCAAGCTCGGCACCGAAATCAT
GCTGTTTCGTCGCCGGGCGCTCACGCGGCTCGACGAACTGGCGCGCGAGGCGAACGCCCAGCTCGGCAGCCGCAAGACGC
TCGCGCTTACGCTGACCGAGAGCACCTCGCCCGAAACCTACGCCGCCGACCTGCGGGGCCGCCGCGCCGAGGAATTGGCA
CGCGGCTCCACCGTCACCGGCCCGCACCGCGACGACCTGCTGCTCACCCTGGGCGACTTTCCAGCGAGCGACTATGCCAG
CCGGGGCGAAGGCCGCACTGTCGCGCTCGCGCTGCGCCGCGCCGAACTCGAACTGCTGCGCGAGAAATTCGGCGAAGACC
CCGTTTTGCTCCTCGACGACTTCACCGCCGAACTCGACCCCCACCGCCGCCAGTACCTGCTCGACCTCGCCGCCAGCGTG
CCGCAGGCCATCGTGACCGGCACCGAACTCGCTCCCGGCGCGGCGCTGACGTTGCGGGCGCAGGCGGGGCGCTTTACTCC
AGTGGCAGATGAGGAGATGCAAGCGGAGGGCACGGCGTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| recF | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
100 |
100 |
1 |