Detailed information
Bioinformatically predicted
Overview
| Name | pilV | Type | Machinery gene |
| Locus tag | HAV23_RS05630 | Genome accession | NZ_CP050116 |
| Coordinates | 1110471..1110947 (-) | Length | 158 a.a. |
| NCBI ID | WP_034349477.1 | Uniprot ID | - |
| Organism | Deinococcus radiodurans strain BNK-50 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1105471..1115947
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HAV23_RS05600 (HAV23_05600) | - | 1105935..1106612 (-) | 678 | WP_010887187.1 | glycerophosphodiester phosphodiesterase | - |
| HAV23_RS05605 (HAV23_05605) | - | 1106717..1107400 (+) | 684 | WP_010887188.1 | SDR family oxidoreductase | - |
| HAV23_RS05610 (HAV23_05610) | - | 1107477..1108244 (+) | 768 | WP_010887189.1 | sulfite exporter TauE/SafE family protein | - |
| HAV23_RS05615 (HAV23_05615) | - | 1108241..1108516 (+) | 276 | WP_027479532.1 | hypothetical protein | - |
| HAV23_RS05620 (HAV23_05620) | pilV | 1108500..1108877 (-) | 378 | WP_010887191.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| HAV23_RS05625 (HAV23_05625) | - | 1109244..1110428 (+) | 1185 | WP_162177563.1 | HTTM domain-containing protein | - |
| HAV23_RS05630 (HAV23_05630) | pilV | 1110471..1110947 (-) | 477 | WP_034349477.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| HAV23_RS05635 (HAV23_05635) | dnaB | 1111381..1112727 (+) | 1347 | WP_010887194.1 | replicative DNA helicase | - |
| HAV23_RS05640 (HAV23_05640) | - | 1112724..1113476 (+) | 753 | WP_010887195.1 | NUDIX hydrolase | - |
| HAV23_RS05645 (HAV23_05645) | - | 1113540..1114898 (-) | 1359 | WP_027479530.1 | acyl-CoA dehydrogenase family protein | - |
| HAV23_RS05650 (HAV23_05650) | - | 1114998..1115618 (+) | 621 | WP_010887197.1 | thiamine diphosphokinase | - |
Sequence
Protein
Download Length: 158 a.a. Molecular weight: 15369.17 Da Isoelectric Point: 7.5899
>NTDB_id=376767 HAV23_RS05630 WP_034349477.1 1110471..1110947(-) (pilV) [Deinococcus radiodurans strain BNK-50]
MKNTTQGFTLIELLIVIAIIGILAAVLIPNLLGARAKANDSATQSYIRNCYTAVEVARGADGRLPAAGNCDSTANLGTNA
VATPGAITAAGAYSLDGTGSKFAVTATSVTNKTFCFDGAKMGEGTGATGACTFSTSTGTGTGTGTGTGTGTGTGTGSN
MKNTTQGFTLIELLIVIAIIGILAAVLIPNLLGARAKANDSATQSYIRNCYTAVEVARGADGRLPAAGNCDSTANLGTNA
VATPGAITAAGAYSLDGTGSKFAVTATSVTNKTFCFDGAKMGEGTGATGACTFSTSTGTGTGTGTGTGTGTGTGTGSN
Nucleotide
Download Length: 477 bp
>NTDB_id=376767 HAV23_RS05630 WP_034349477.1 1110471..1110947(-) (pilV) [Deinococcus radiodurans strain BNK-50]
ATGAAGAACACCACCCAAGGCTTCACCCTGATCGAACTGCTCATCGTCATCGCCATCATCGGCATCCTGGCCGCCGTGTT
GATCCCCAACCTGCTGGGCGCCCGCGCCAAGGCCAACGACAGCGCCACCCAGAGCTACATCCGCAACTGCTACACCGCCG
TGGAAGTGGCCCGTGGTGCTGACGGCCGCCTGCCTGCTGCTGGCAACTGCGACAGCACGGCCAACCTGGGTACCAACGCT
GTGGCTACCCCTGGTGCAATCACTGCGGCAGGCGCTTACAGCCTGGATGGTACTGGTAGCAAGTTTGCCGTTACTGCCAC
CAGCGTGACCAACAAGACCTTCTGCTTCGACGGCGCGAAGATGGGCGAAGGCACTGGCGCTACTGGTGCCTGCACCTTCA
GCACCAGCACCGGCACCGGCACTGGTACCGGCACTGGTACCGGCACTGGCACCGGCACTGGTACCGGCAGCAACTAA
ATGAAGAACACCACCCAAGGCTTCACCCTGATCGAACTGCTCATCGTCATCGCCATCATCGGCATCCTGGCCGCCGTGTT
GATCCCCAACCTGCTGGGCGCCCGCGCCAAGGCCAACGACAGCGCCACCCAGAGCTACATCCGCAACTGCTACACCGCCG
TGGAAGTGGCCCGTGGTGCTGACGGCCGCCTGCCTGCTGCTGGCAACTGCGACAGCACGGCCAACCTGGGTACCAACGCT
GTGGCTACCCCTGGTGCAATCACTGCGGCAGGCGCTTACAGCCTGGATGGTACTGGTAGCAAGTTTGCCGTTACTGCCAC
CAGCGTGACCAACAAGACCTTCTGCTTCGACGGCGCGAAGATGGGCGAAGGCACTGGCGCTACTGGTGCCTGCACCTTCA
GCACCAGCACCGGCACCGGCACTGGTACCGGCACTGGTACCGGCACTGGCACCGGCACTGGTACCGGCAGCAACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilV | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
100 |
100 |
1 |