Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   FQ488_RS11405 Genome accession   NZ_CP042289
Coordinates   2422214..2424028 (-) Length   604 a.a.
NCBI ID   WP_010737099.1    Uniprot ID   -
Organism   Enterococcus hirae strain HDC14-2     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2417214..2429028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQ488_RS11385 (FQ488_11455) - 2417288..2418745 (+) 1458 WP_185184766.1 glycoside-pentoside-hexuronide (GPH):cation symporter -
  FQ488_RS11390 (FQ488_11460) - 2418761..2419795 (+) 1035 WP_010737102.1 aldose epimerase family protein -
  FQ488_RS11395 (FQ488_11465) - 2419798..2420985 (+) 1188 WP_185184767.1 galactokinase -
  FQ488_RS11400 (FQ488_11470) - 2421203..2421670 (-) 468 WP_034867740.1 DUF4809 family protein -
  FQ488_RS15470 - 2421667..2421843 (-) 177 WP_155467379.1 hypothetical protein -
  FQ488_RS11405 (FQ488_11475) pepF 2422214..2424028 (-) 1815 WP_010737099.1 oligoendopeptidase F Regulator
  FQ488_RS11410 (FQ488_11480) - 2424151..2425146 (-) 996 WP_010737098.1 competence protein CoiA -
  FQ488_RS11415 (FQ488_11485) - 2425246..2425893 (-) 648 WP_010720865.1 adaptor protein MecA -
  FQ488_RS11420 (FQ488_11490) spxA 2426281..2426679 (-) 399 WP_002296384.1 transcriptional regulator SpxA -
  FQ488_RS11425 (FQ488_11495) - 2427458..2428165 (+) 708 WP_010720866.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 69937.30 Da        Isoelectric Point: 4.7922

>NTDB_id=376669 FQ488_RS11405 WP_010737099.1 2422214..2424028(-) (pepF) [Enterococcus hirae strain HDC14-2]
MSETTQLPKREELPEELTWDLTKIFSSDQEFDEKYQELTEELKNSDQYKGTLAKGATEFLNALEFVLDVYRKVELIYVYA
HLKNDQDTANTTYQALYARAGSLFSKVSEAVSWYEPEVLQLSDEQIWQYFEQEPKLELYRHYVKQMVDNRAHILSAEQES
LLAGAGEIFGASSDTFAVLNNADLEFPTIVGEDGKKIQLSHGVYGQLMESTDRTVREAAFKGLYRVYDQFKNTFASTLST
HIKGHNYKAKIRHYHSAREASLSNNHIPESVYDTLIEVVNKNLPLLHRYMELRKRLLNVEKLHMYDLYTPVLGEAPIKFT
YEEAKQKALEALAPMGEEYLSVVEKAFADRWIDVIENKGKRSGAYSSGSYDTNPYILMNWHDTLDQLFTLVHEMGHSVHS
YFTRSNQPFVYGDYSIFLAEIASTTNENILTEYLLETEQDPRVRAYVLNHYLDGFKGTIFRQTQFAEFEHFMHEEDAKGV
PLTSEYLSDSYGELNAKYYGSAVEKDPEIKYEWSRIPHFYYNYYVYQYATGFSAASALAHKIWGQEPDALEKYLTYLKSG
NSDYPVEVMKKAGVDMTKADYIESAMTKFEQRLNELEELVEKLS

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=376669 FQ488_RS11405 WP_010737099.1 2422214..2424028(-) (pepF) [Enterococcus hirae strain HDC14-2]
ATGAGTGAAACGACCCAATTACCAAAACGAGAAGAATTGCCTGAAGAACTGACTTGGGATCTCACCAAAATCTTTTCTAG
CGATCAAGAATTTGATGAAAAATACCAAGAATTAACAGAAGAATTAAAAAATTCCGATCAATATAAAGGAACATTAGCAA
AGGGTGCGACAGAATTTCTGAATGCGCTTGAATTTGTTTTAGATGTTTACCGAAAAGTGGAACTCATTTATGTCTATGCT
CATTTAAAAAATGACCAAGATACAGCAAATACGACTTATCAAGCGTTATATGCGAGAGCAGGAAGTTTATTTTCTAAAGT
AAGTGAAGCAGTCTCTTGGTATGAACCAGAAGTCCTTCAACTTTCGGATGAGCAGATTTGGCAGTATTTTGAGCAAGAGC
CGAAGTTAGAACTGTATCGTCATTACGTAAAACAAATGGTGGATAATCGTGCGCATATATTATCTGCAGAACAAGAATCA
TTACTAGCTGGAGCAGGAGAAATTTTTGGCGCTTCCAGTGATACATTTGCTGTTTTAAACAATGCCGATCTAGAGTTTCC
TACGATCGTGGGAGAAGATGGGAAAAAAATCCAGCTTTCTCATGGTGTCTATGGTCAATTGATGGAAAGCACAGATCGTA
CAGTTAGAGAAGCTGCATTCAAAGGGCTTTATCGTGTCTATGATCAATTTAAAAATACGTTTGCTTCAACATTGAGTACC
CATATCAAAGGGCACAATTACAAAGCAAAAATTCGCCATTATCATTCTGCTAGAGAAGCTTCTTTGAGCAACAATCATAT
CCCAGAAAGTGTTTATGATACATTGATTGAAGTAGTCAATAAAAATCTTCCGCTATTGCATCGCTATATGGAATTACGCA
AACGTCTTTTAAATGTAGAAAAACTGCATATGTATGATCTATATACACCAGTATTAGGAGAAGCTCCTATCAAGTTCACT
TACGAAGAAGCGAAACAGAAAGCTTTGGAAGCTTTGGCACCAATGGGGGAAGAATATCTGTCAGTGGTAGAAAAAGCTTT
TGCTGACCGTTGGATCGATGTGATCGAAAATAAAGGGAAACGAAGTGGCGCTTATTCTTCAGGAAGCTATGATACCAATC
CTTATATTTTAATGAACTGGCATGATACGTTGGATCAATTATTTACGCTCGTACATGAAATGGGACATAGTGTGCATAGT
TACTTTACTCGTTCAAATCAACCGTTTGTTTACGGTGATTATTCCATTTTCTTAGCAGAGATTGCTTCAACAACTAATGA
AAATATTTTGACAGAATACTTGCTTGAAACTGAACAAGATCCACGTGTTCGTGCATATGTCTTGAATCATTATCTTGATG
GATTCAAAGGAACGATTTTCAGACAAACACAATTTGCAGAATTTGAGCATTTCATGCATGAAGAAGATGCCAAAGGTGTA
CCTTTGACCAGTGAATATCTAAGCGACAGTTATGGGGAATTGAATGCCAAATATTATGGATCAGCGGTAGAAAAAGATCC
GGAAATCAAATATGAATGGTCTCGTATCCCACATTTCTACTATAATTATTATGTTTATCAATATGCAACAGGCTTTTCAG
CTGCCTCTGCTTTGGCGCATAAAATTTGGGGTCAAGAGCCAGATGCTCTAGAAAAATACCTTACTTATTTGAAATCAGGA
AATAGTGATTACCCAGTTGAAGTCATGAAAAAAGCAGGCGTCGACATGACAAAAGCTGATTATATCGAATCAGCTATGAC
TAAGTTTGAACAACGATTAAATGAATTAGAGGAACTAGTTGAAAAATTGTCATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-586)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

56.566

98.344

0.556

Multiple sequence alignment