Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FPV14_RS03490 Genome accession   NZ_CP042286
Coordinates   753186..754550 (+) Length   454 a.a.
NCBI ID   WP_146501693.1    Uniprot ID   -
Organism   Staphylococcus argenteus strain B3-25B     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 748186..759550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPV14_RS03470 (FPV14_03470) - 748195..748656 (+) 462 WP_000551760.1 CtsR family transcriptional regulator -
  FPV14_RS03475 (FPV14_03475) - 748675..749241 (+) 567 WP_000882064.1 UvrB/UvrC motif-containing protein -
  FPV14_RS03480 (FPV14_03480) - 749231..750238 (+) 1008 WP_047435223.1 protein arginine kinase -
  FPV14_RS03485 (FPV14_03485) - 750253..752709 (+) 2457 WP_000897144.1 ATP-dependent Clp protease ATP-binding subunit -
  FPV14_RS03490 (FPV14_03490) radA 753186..754550 (+) 1365 WP_146501693.1 DNA repair protein RadA Machinery gene
  FPV14_RS03495 (FPV14_03495) - 754575..755648 (+) 1074 WP_001028364.1 PIN/TRAM domain-containing protein -
  FPV14_RS03500 (FPV14_03500) gltX 756138..757592 (+) 1455 WP_031787935.1 glutamate--tRNA ligase -
  FPV14_RS03505 (FPV14_03505) cysE 758009..758656 (+) 648 WP_072291959.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49854.32 Da        Isoelectric Point: 7.0049

>NTDB_id=376610 FPV14_RS03490 WP_146501693.1 753186..754550(+) (radA) [Staphylococcus argenteus strain B3-25B]
MAKKKVIFECMACGYQSPKWMGKCPNCGAWNQMEEIVEKAANPKHGVKTKEIAGKVQKLNSIKHETTPRVLTDSAEFNRV
LGGGIVSGSLVLIGGDPGIGKSTLLLQICASLSQKKKVLYITGEESFNQTKLRAERLDEDSSELQVLAETDLEVIYQTVK
EEQPDLLVVDSIQTIYHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGDE
HHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVNNPSEMFLEERSTNVPGSTIVATMEGTRPLLIEVQALVTPTTFNNPR
RMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVKLTEPAVDLSVIVATASSFKDKAVDGLDCYIGEVGLTGEVR
RVSRIEQRVQEAAKLGFKRAIIPKNNIGGWTYPEGIQVIGVTSVHEALSFALHS

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=376610 FPV14_RS03490 WP_146501693.1 753186..754550(+) (radA) [Staphylococcus argenteus strain B3-25B]
TTGGCCAAGAAAAAAGTGATTTTTGAATGTATGGCTTGTGGTTATCAATCTCCTAAATGGATGGGGAAATGCCCCAATTG
TGGTGCTTGGAATCAAATGGAGGAAATTGTTGAAAAAGCTGCCAATCCAAAGCATGGAGTAAAAACAAAAGAAATAGCTG
GTAAAGTACAAAAACTAAATAGTATTAAACATGAAACGACACCTAGAGTATTAACGGATTCTGCAGAATTCAACCGCGTA
TTAGGTGGCGGTATTGTTAGCGGATCACTGGTCCTGATAGGTGGAGATCCAGGTATTGGTAAGTCAACGTTACTTTTACA
AATTTGTGCTTCTTTATCACAAAAGAAAAAAGTGTTATATATTACTGGGGAAGAATCCTTTAATCAAACGAAACTTCGAG
CAGAGCGTTTAGATGAAGACTCTAGTGAATTACAAGTATTAGCAGAAACAGATTTAGAAGTTATATATCAGACAGTTAAA
GAAGAACAACCAGACTTATTAGTAGTTGATTCTATTCAAACGATTTATCACCCTGAAATTAGTTCGGCACCGGGTTCTGT
TTCGCAAGTTCGTGAAAGTACACAAAGTTTAATGAACATTGCTAAACAAATGAATATTGCAACTTTTATTGTTGGACATG
TAACGAAAGAAGGTCAAATTGCAGGTCCTAGATTATTGGAACATATGGTAGATACAGTGCTTTATTTTGAAGGTGATGAA
CATCATGCATATCGAATTTTACGTGCTGTTAAAAACCGTTTTGGCTCTACAAATGAAATGGGTATTTTTGAAATGAAACA
AAGCGGATTAAAAGGTGTTAATAATCCGTCTGAAATGTTTTTAGAAGAACGTTCTACAAATGTTCCTGGGTCTACAATTG
TTGCAACAATGGAAGGTACAAGACCACTTTTAATAGAAGTACAAGCGCTTGTGACACCGACAACATTTAATAATCCGAGA
AGAATGGCAACGGGAATTGATCATAATCGACTTAGTTTACTAATGGCTGTTTTAGAAAAGAAAGAAAATTATTTATTACA
GCAACAAGATGCTTATATCAAAGTCGCAGGTGGTGTGAAATTAACAGAGCCAGCTGTTGATTTAAGTGTAATTGTGGCTA
CCGCATCAAGCTTTAAAGATAAAGCAGTTGATGGTTTAGATTGTTACATTGGAGAAGTTGGTTTAACGGGTGAGGTACGT
CGCGTATCTCGGATAGAGCAGCGCGTACAAGAAGCTGCAAAGTTAGGCTTCAAACGTGCAATTATTCCTAAAAATAATAT
TGGCGGATGGACATATCCAGAAGGGATTCAAGTAATTGGCGTAACTTCTGTACATGAAGCACTATCATTCGCTCTACATT
CATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(77-218)

Subunit ChlI of Mg-chelatase (ChlI)

(353-426)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.667

100

0.674
  radA Streptococcus pneumoniae Rx1

61.83

98.678

0.61
  radA Streptococcus pneumoniae D39

61.83

98.678

0.61
  radA Streptococcus pneumoniae R6

61.83

98.678

0.61
  radA Streptococcus pneumoniae TIGR4

61.83

98.678

0.61
  radA Streptococcus mitis NCTC 12261

61.83

98.678

0.61
  radA Streptococcus mitis SK321

61.83

98.678

0.61

Multiple sequence alignment