Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FQN59_RS15625 Genome accession   NZ_CP042285
Coordinates   3762970..3764340 (+) Length   456 a.a.
NCBI ID   WP_005858247.1    Uniprot ID   A0A223HK93
Organism   Parabacteroides distasonis strain APCS2/PD     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3757970..3769340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQN59_RS15610 (FQN59_15990) - 3758309..3759184 (-) 876 WP_057325959.1 arginase family protein -
  FQN59_RS15615 (FQN59_15995) - 3759357..3761609 (+) 2253 WP_211737333.1 GH92 family glycosyl hydrolase -
  FQN59_RS22750 - 3761670..3761804 (-) 135 WP_005858250.1 hypothetical protein -
  FQN59_RS15620 (FQN59_16000) - 3761938..3762936 (+) 999 WP_211737335.1 isoaspartyl peptidase/L-asparaginase family protein -
  FQN59_RS15625 (FQN59_16005) radA 3762970..3764340 (+) 1371 WP_005858247.1 DNA repair protein RadA Machinery gene
  FQN59_RS15630 (FQN59_16010) - 3764354..3765958 (+) 1605 WP_008774174.1 NAD(P)/FAD-dependent oxidoreductase -
  FQN59_RS15635 (FQN59_16015) - 3765976..3767097 (+) 1122 WP_009274810.1 glycoside hydrolase family 43 protein -
  FQN59_RS15640 (FQN59_16020) - 3767091..3767480 (-) 390 WP_005866180.1 hypothetical protein -
  FQN59_RS15645 (FQN59_16025) - 3767493..3768302 (-) 810 WP_211737337.1 peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49827.63 Da        Isoelectric Point: 6.6073

>NTDB_id=376601 FQN59_RS15625 WP_005858247.1 3762970..3764340(+) (radA) [Parabacteroides distasonis strain APCS2/PD]
MAKTKTVYVCSNCGADSPKWLGKCPNCGEWNTYVEEIVTKEPAVKRPVPGIMEGNKIRPVLLRDITTEEEARIDLKDDEL
NRVLGGGLVKGSLVLIGGEPGIGKSTLVLQTVLGLTGLKTLYVSGEESSRQLKLRADRLSHDNPNCFILCETHLEQIFTQ
AANIQPDLMIIDSIQTIFTEVVESSPGSVSQVRECSAAILKYAKESGVPVLLIGHINKEGSIAGPKVLEHIVDTVLQFEG
DQHYMYRILRSIKNRFGSTAELGIYEMRQNGLREVSNPSELLLTQNHEGLSGVAIAAAIEGVRPFLIETQALVSSAVYGT
PQRSATGFDLRRMNMLLAVLEKRAGFKLIQKDVFLNIAGGLKVNDPAIDLAVISSILSSSLDISIEPGVCMAGEVGLSGE
IRPVNRIEQRILEAEKLGFSRIIIPHNNLKGFDTAKSKIQIVQVKKVEEAFRQLFG

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=376601 FQN59_RS15625 WP_005858247.1 3762970..3764340(+) (radA) [Parabacteroides distasonis strain APCS2/PD]
ATGGCGAAAACAAAAACCGTATATGTCTGCTCTAACTGTGGCGCTGATTCCCCGAAATGGCTGGGTAAATGCCCGAATTG
TGGGGAGTGGAACACCTATGTGGAGGAGATCGTAACGAAGGAGCCTGCCGTGAAGCGGCCAGTTCCCGGTATTATGGAGG
GCAATAAGATCCGTCCGGTGTTATTGCGTGATATAACGACGGAAGAGGAGGCCCGTATCGATTTAAAAGATGATGAATTA
AACAGGGTCCTCGGCGGAGGCTTGGTGAAAGGCTCTTTGGTCTTGATCGGGGGAGAGCCGGGAATCGGAAAATCTACCTT
GGTCTTGCAAACCGTGTTGGGCTTGACAGGCTTGAAAACCCTATATGTCTCGGGCGAGGAGAGCAGTCGCCAGTTGAAAC
TCCGGGCGGACCGATTATCGCATGATAATCCGAACTGTTTCATCTTATGCGAGACACATCTGGAACAGATTTTTACGCAA
GCGGCCAATATCCAGCCGGACTTGATGATCATAGATTCCATACAAACCATCTTTACGGAAGTCGTGGAATCTTCCCCCGG
CAGTGTTTCCCAAGTACGCGAGTGTAGCGCCGCTATCTTGAAATACGCCAAGGAAAGCGGTGTCCCGGTCTTATTGATCG
GCCATATCAATAAGGAAGGCAGTATCGCCGGTCCGAAGGTATTGGAGCATATCGTGGATACGGTGTTGCAGTTTGAGGGC
GATCAGCATTATATGTATCGTATCTTGCGGAGCATCAAGAACCGTTTCGGCAGTACGGCGGAACTAGGGATTTACGAGAT
GCGCCAGAACGGGCTTCGTGAGGTCAGCAATCCATCCGAGTTATTATTAACCCAGAATCATGAGGGACTGAGCGGTGTCG
CCATCGCCGCCGCTATCGAGGGGGTACGTCCTTTCTTGATCGAGACGCAAGCCTTGGTCAGCTCGGCGGTTTACGGTACG
CCGCAACGTAGCGCCACCGGATTCGATTTACGCCGAATGAATATGTTATTGGCGGTATTGGAGAAAAGGGCGGGTTTTAA
GTTGATCCAGAAAGATGTTTTCCTGAATATCGCCGGAGGTTTGAAAGTGAATGATCCGGCTATCGATTTGGCGGTAATCA
GCTCCATCCTTTCCTCTAGCTTGGATATCAGCATCGAGCCGGGTGTTTGTATGGCCGGAGAGGTGGGCTTGTCCGGAGAG
ATCCGTCCGGTCAACCGTATCGAGCAACGTATCTTGGAGGCGGAGAAGCTGGGTTTCTCCCGGATTATCATTCCGCATAA
TAATCTAAAAGGTTTCGATACGGCGAAAAGTAAGATCCAAATCGTACAGGTAAAGAAAGTGGAGGAAGCCTTTCGGCAAC
TATTCGGTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(342-428)

AAA domain (AAA_25)

(69-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A223HK93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

52.838

100

0.531
  radA Streptococcus mitis NCTC 12261

49.234

100

0.493
  radA Streptococcus pneumoniae Rx1

49.015

100

0.491
  radA Streptococcus pneumoniae D39

49.015

100

0.491
  radA Streptococcus pneumoniae R6

49.015

100

0.491
  radA Streptococcus pneumoniae TIGR4

49.015

100

0.491
  radA Streptococcus mitis SK321

49.015

100

0.491

Multiple sequence alignment