Detailed information NTG0376593

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: FQN58_RS24505
• Genome accession: NZ_CP042282
• Coordinates: 6080362..6081729 (-)
• Length: 455 a.a.
• NCBI ID: WP_004315266.1
• Uniprot ID: A0A943J827
• Organism: Bacteroides xylanisolvens strain APCS1/XY
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 6075362..6086729

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FQN58_RS24495 (FQN58_24995)	-	6078013..6078615 (-)	603	WP_008640722.1	response regulator transcription factor	-
FQN58_RS24500 (FQN58_25000)	-	6078632..6080281 (-)	1650	WP_008640723.1	FAD-dependent protein	-
FQN58_RS24505 (FQN58_25005)	radA	6080362..6081729 (-)	1368	WP_004315266.1	DNA repair protein RadA	Machinery gene
FQN58_RS24510 (FQN58_25010)	-	6081741..6082940 (-)	1200	WP_008025260.1	AAA family ATPase	-
FQN58_RS24515 (FQN58_25015)	-	6083044..6084081 (-)	1038	WP_004315264.1	asparaginase	-

Sequence

Protein

• Length: 455 a.a.
• Molecular weight: 50112.72 Da
• Isoelectric Point: 5.9344

>NTDB_id=376593 FQN58_RS24505 WP_004315266.1 6080362..6081729(-) (radA) [Bacteroides xylanisolvens strain APCS1/XY]
MAKEKTVYVCSNCGQDSPKWVGKCPSCGEWNTYVEEIVRKEPTNRRPVSGIETQKPKPLALSDIEADDEPRINMHDDELN
RVLGGGLVPGSLVLIGGEPGIGKSTLVMQTVLHMPEKKILYVSGEESARQLKLRADRLSDTSSDCLIVCETSLEQIYVHI
KNTNPDLVIIDSIQTISTESIESSPGSIAQVRECSASILRFAKETHTPVLLIGHINKEGSIAGPKVLEHIVDTVLQFEGD
QHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVNNPSELLLSQDHEGMSGVAIASAIEGIRPFLIETQALVSSAVYGNP
QRSATGFDLRRMNMLLAVLEKRVGFKLAQKDVFLNIAGGLKVNDPAIDLPVISAILSSNMDAAIEPEVCMAGEIGLSGEI
RPVNRIEQRIGEAEKLGFKRFLLPKYNLQGIDTKKLKIELVPVRKVEEAFRALFG

Nucleotide

• Length: 1368 bp

>NTDB_id=376593 FQN58_RS24505 WP_004315266.1 6080362..6081729(-) (radA) [Bacteroides xylanisolvens strain APCS1/XY]
ATGGCAAAAGAGAAAACCGTATATGTATGCAGTAATTGCGGACAGGATTCACCGAAATGGGTGGGTAAATGTCCGTCGTG
TGGAGAATGGAATACGTATGTTGAGGAAATCGTACGGAAAGAACCTACCAACCGCCGTCCGGTGTCGGGCATTGAAACAC
AGAAACCCAAACCACTGGCACTTAGCGATATTGAAGCGGACGACGAGCCACGCATCAATATGCACGATGATGAATTGAAT
CGCGTATTGGGTGGCGGACTTGTGCCGGGTTCTCTTGTCCTGATAGGCGGTGAGCCGGGAATCGGTAAATCCACGCTCGT
CATGCAGACCGTACTGCACATGCCGGAAAAGAAAATCCTTTATGTGTCCGGTGAAGAAAGTGCACGACAGCTTAAACTCC
GTGCCGACCGTCTCTCTGATACTTCCAGCGATTGCCTGATTGTTTGTGAGACTTCGCTCGAACAAATTTATGTGCATATC
AAGAATACGAATCCTGATTTAGTGATTATTGACTCTATACAGACTATTTCCACCGAGAGTATCGAATCATCTCCCGGAAG
TATTGCGCAAGTCAGAGAGTGTTCGGCATCTATTCTTCGTTTCGCGAAAGAAACGCATACCCCTGTGTTGCTGATCGGTC
ATATTAATAAAGAAGGAAGTATTGCAGGACCTAAAGTGCTGGAACATATCGTAGATACCGTCCTTCAATTTGAAGGCGAT
CAGCATTATATGTATCGTATTCTGCGCAGCATCAAGAATCGTTTCGGCAGTACGGCAGAGTTAGGGATTTATGAAATGCG
TCAGGATGGGTTGCGCCAGGTGAATAATCCTTCCGAGCTTTTGCTTAGTCAGGATCATGAGGGAATGAGTGGAGTAGCTA
TTGCTTCCGCTATCGAAGGAATCCGCCCGTTCTTGATCGAGACACAGGCTTTGGTCAGCTCTGCTGTTTATGGAAATCCT
CAACGTTCGGCAACCGGTTTCGATTTAAGAAGAATGAATATGCTGCTGGCTGTTCTCGAAAAACGTGTCGGATTTAAGCT
GGCACAGAAAGATGTGTTCCTGAATATTGCCGGAGGACTGAAGGTGAATGACCCGGCTATCGACTTGCCGGTTATCAGTG
CCATCCTTTCGTCCAATATGGACGCAGCCATTGAGCCGGAAGTTTGCATGGCGGGAGAAATCGGACTGTCGGGAGAGATA
CGTCCTGTAAATCGAATAGAGCAACGTATCGGTGAAGCCGAGAAATTGGGTTTTAAACGGTTCTTGTTGCCAAAATATAA
TTTGCAAGGGATTGACACTAAGAAACTGAAGATCGAGTTAGTTCCGGTGAGAAAGGTAGAAGAAGCATTCAGAGCTCTAT
TCGGATAG

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (58-219)

• Subunit ChlI of Mg-chelatase (ChlI) (341-427)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	51.522	100	0.521
radA	Streptococcus mitis SK321	47.912	100	0.479
radA	Streptococcus pneumoniae Rx1	47.912	100	0.479
radA	Streptococcus pneumoniae D39	47.912	100	0.479
radA	Streptococcus pneumoniae R6	47.912	100	0.479
radA	Streptococcus pneumoniae TIGR4	47.912	100	0.479
radA	Streptococcus mitis NCTC 12261	47.912	100	0.479