Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   FQV73_RS14165 Genome accession   NZ_CP042271
Coordinates   2906974..2907264 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain LPL061     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2901974..2912264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQV73_RS14125 darA 2901991..2902320 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  FQV73_RS14130 - 2902333..2902773 (+) 441 WP_004264730.1 DUF327 family protein -
  FQV73_RS14135 holB 2902785..2903774 (+) 990 WP_031379324.1 DNA polymerase III subunit delta' -
  FQV73_RS14140 ricT 2903777..2904604 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  FQV73_RS14145 yabA 2904619..2904978 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  FQV73_RS14150 - 2905039..2905782 (+) 744 WP_014304191.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  FQV73_RS14155 - 2905769..2906068 (+) 300 WP_004264714.1 GIY-YIG nuclease family protein -
  FQV73_RS14160 rsmI 2906043..2906924 (+) 882 WP_043866771.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  FQV73_RS14165 abrB 2906974..2907264 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  FQV73_RS14170 metG 2907747..2909738 (+) 1992 WP_043866772.1 methionine--tRNA ligase -
  FQV73_RS14175 - 2909814..2910581 (+) 768 WP_043866773.1 TatD family hydrolase -
  FQV73_RS14180 - 2910716..2912041 (+) 1326 WP_088005470.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=376562 FQV73_RS14165 WP_169510469.1 2906974..2907264(-) (abrB) [Bacillus velezensis strain LPL061]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=376562 FQV73_RS14165 WP_169510469.1 2906974..2907264(-) (abrB) [Bacillus velezensis strain LPL061]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979

Multiple sequence alignment