Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   FQV73_RS13970 Genome accession   NZ_CP042271
Coordinates   2869566..2870678 (+) Length   370 a.a.
NCBI ID   WP_014304178.1    Uniprot ID   -
Organism   Bacillus velezensis strain LPL061     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2849551..2890951 2869566..2870678 within 0


Gene organization within MGE regions


Location: 2849551..2890951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQV73_RS13865 ssbA 2849551..2850069 (-) 519 WP_004392979.1 single-stranded DNA-binding protein SsbA Machinery gene
  FQV73_RS13870 rpsF 2850109..2850396 (-) 288 WP_004392977.1 30S ribosomal protein S6 -
  FQV73_RS13875 ychF 2850508..2851608 (-) 1101 WP_004392975.1 redox-regulated ATPase YchF -
  FQV73_RS13880 - 2851735..2853738 (-) 2004 WP_043867607.1 molybdopterin-dependent oxidoreductase -
  FQV73_RS13885 - 2853785..2853991 (-) 207 WP_004392973.1 DUF951 domain-containing protein -
  FQV73_RS13890 - 2854077..2855102 (-) 1026 WP_088005468.1 hypothetical protein -
  FQV73_RS13895 - 2855391..2855732 (+) 342 WP_240903259.1 GNAT family N-acetyltransferase -
  FQV73_RS13900 yyaC 2855905..2856519 (+) 615 WP_004392969.1 spore protease YyaC -
  FQV73_RS13905 - 2856549..2857400 (-) 852 WP_004392966.1 ParB/RepB/Spo0J family partition protein -
  FQV73_RS13910 soj 2857393..2858154 (-) 762 WP_004392964.1 sporulation initiation inhibitor protein Soj -
  FQV73_RS13915 noc 2858453..2859304 (-) 852 WP_007409900.1 nucleoid occlusion protein -
  FQV73_RS13920 rsmG 2859426..2860145 (-) 720 WP_014306213.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  FQV73_RS13925 mnmG 2860159..2862045 (-) 1887 WP_004392959.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG -
  FQV73_RS13930 mnmE 2862062..2863441 (-) 1380 WP_004392954.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE -
  FQV73_RS13935 jag 2863730..2864371 (-) 642 WP_004392953.1 RNA-binding cell elongation regulator Jag/EloR -
  FQV73_RS13940 spoIIIJ 2864368..2865117 (-) 750 WP_007409906.1 YidC family membrane integrase SpoIIIJ -
  FQV73_RS13945 rnpA 2865278..2865628 (-) 351 WP_004392944.1 ribonuclease P protein component -
  FQV73_RS13950 rpmH 2865783..2865917 (-) 135 WP_003178075.1 50S ribosomal protein L34 -
  FQV73_RS13955 dnaA 2866539..2867879 (+) 1341 WP_004392913.1 chromosomal replication initiator protein DnaA -
  FQV73_RS13960 dnaN 2868064..2869200 (+) 1137 WP_004392911.1 DNA polymerase III subunit beta -
  FQV73_RS13965 rlbA 2869335..2869550 (+) 216 WP_043867608.1 ribosome maturation protein RlbA -
  FQV73_RS13970 recF 2869566..2870678 (+) 1113 WP_014304178.1 DNA replication/repair protein RecF Machinery gene
  FQV73_RS13975 - 2870696..2870941 (+) 246 WP_004392908.1 extracellular matrix/biofilm biosynthesis regulator RemA family protein -
  FQV73_RS13980 gyrB 2871001..2872917 (+) 1917 WP_004392900.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  FQV73_RS13985 gyrA 2873133..2875592 (+) 2460 WP_004392898.1 DNA gyrase subunit A -
  FQV73_RS13990 - 2876028..2876978 (-) 951 WP_015388795.1 YaaC family protein -
  FQV73_RS13995 guaB 2877099..2878565 (+) 1467 WP_003150717.1 IMP dehydrogenase -
  FQV73_RS14000 dacA 2878718..2880049 (+) 1332 WP_003150715.1 D-alanyl-D-alanine carboxypeptidase -
  FQV73_RS14005 pdxS 2880247..2881131 (+) 885 WP_003150714.1 pyridoxal 5'-phosphate synthase lyase subunit PdxS -
  FQV73_RS14010 pdxT 2881153..2881743 (+) 591 WP_003150711.1 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT -
  FQV73_RS14015 serS 2882063..2883340 (+) 1278 WP_003150709.1 serine--tRNA ligase -
  FQV73_RS14020 - 2883352..2884497 (-) 1146 WP_043866767.1 glycerate kinase -
  FQV73_RS14030 dck 2884938..2885591 (-) 654 WP_015388792.1 deoxyadenosine/deoxycytidine kinase -
  FQV73_RS14035 - 2885588..2886211 (-) 624 WP_032858523.1 deoxynucleoside kinase -
  FQV73_RS14040 - 2886307..2887590 (-) 1284 WP_032865795.1 glycoside hydrolase family 18 protein -
  FQV73_RS14045 - 2887662..2888174 (-) 513 WP_046376732.1 isochorismatase family cysteine hydrolase -
  FQV73_RS14050 tadA 2888296..2888778 (+) 483 WP_003150702.1 tRNA adenosine(34) deaminase TadA -
  FQV73_RS14060 dnaX 2889260..2890951 (+) 1692 WP_003150701.1 DNA polymerase III subunit gamma/tau -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42428.35 Da        Isoelectric Point: 7.0882

>NTDB_id=376560 FQV73_RS13970 WP_014304178.1 2869566..2870678(+) (recF) [Bacillus velezensis strain LPL061]
MYIQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVMKRNGD
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSAVYLYDLSLYQKILSQR
NHFLKQLQSRKQTDRTMLDVLTDQLIEAAAKVVARRLQFTAQLEKWAQPIHSGISRGIEELTLKYHTALDVSDPKDLSKI
GNSYQESFSKLKEKEIERGVTLFGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHDTLHQAGMFRVENGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=376560 FQV73_RS13970 WP_014304178.1 2869566..2870678(+) (recF) [Bacillus velezensis strain LPL061]
TTGTATATCCAAAATTTAGAATTAACATCCTACCGTAATTATGAGCGCGCTGAGCTTCAATTCGAAAACAAGGTGAATGT
GATCATCGGGGAAAATGCCCAGGGCAAAACCAATCTGATGGAAGCCATCTATGTCCTTTCGATGGCAAAATCACACCGCA
CCTCAAATGACAAAGAACTTATACGGTGGGACGAAGACTATGCTAAAATAGAAGGAAGAGTGATGAAGCGCAACGGGGAC
ATCCCGATGCAGCTTGTCATCTCCAAAAAAGGTAAAAAGGGCAAGGTCAATCATATAGAGCAGCAAAAACTCAGTCAGTA
TGTCGGAGCGCTGAACACCATTATGTTTGCCCCTGAGGATTTAAATCTCGTCAAAGGAAGCCCTCAGGTGAGGAGAAGAT
TTCTCGATATGGAGATCGGGCAGGTTTCTGCCGTTTATCTGTATGATTTATCTCTTTATCAAAAAATCCTTTCACAGCGG
AATCATTTTCTGAAACAGCTGCAAAGCCGGAAACAGACTGACCGGACCATGCTTGACGTTCTCACTGATCAGCTGATCGA
AGCAGCCGCAAAAGTTGTCGCCAGACGTCTGCAGTTTACGGCGCAGCTTGAAAAATGGGCGCAGCCGATCCATTCCGGCA
TTTCCCGGGGAATTGAAGAACTGACGCTTAAGTATCACACGGCGCTTGATGTATCAGATCCCAAAGATTTGTCGAAAATA
GGTAACAGCTACCAGGAGTCTTTTTCGAAATTAAAAGAAAAAGAAATAGAACGAGGCGTCACATTATTCGGACCGCATCG
GGATGATGTCCTTTTTTATGTGAACGGACGCGATGTGCAGACTTACGGTTCGCAGGGACAGCAGCGTACGACGGCTTTGT
CTCTGAAGCTGGCTGAAATAGATTTGATTCATGAAGAAATCGGAGAATACCCCATTTTACTTTTGGATGATGTACTAAGC
GAGCTGGATGATTACCGACAGTCCCATTTGCTTCATACGATCCAAGGCCGTGTGCAGACATTTGTCACCACGACGAGCGT
GGATGGCATTGACCACGATACCTTACATCAAGCAGGAATGTTCCGTGTGGAAAACGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

94.054

100

0.941

Multiple sequence alignment