Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   FQV73_RS01785 Genome accession   NZ_CP042271
Coordinates   333956..334240 (+) Length   94 a.a.
NCBI ID   WP_024085249.1    Uniprot ID   -
Organism   Bacillus velezensis strain LPL061     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 328956..339240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQV73_RS01765 - 330191..331111 (+) 921 WP_043867056.1 ketopantoate reductase family protein -
  FQV73_RS01770 - 331141..332373 (-) 1233 WP_043867057.1 aminopeptidase -
  FQV73_RS01775 - 332474..332608 (-) 135 WP_003154559.1 protein YkpC -
  FQV73_RS01780 mreBH 332680..333687 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  FQV73_RS01785 abrB 333956..334240 (+) 285 WP_024085249.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  FQV73_RS01790 - 334413..335717 (+) 1305 WP_014304932.1 ATP-binding protein -
  FQV73_RS01795 - 335719..336546 (+) 828 WP_003154555.1 gamma-glutamylcyclotransferase family protein -
  FQV73_RS01800 ktrC 336587..337252 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  FQV73_RS01805 ade 337401..339134 (+) 1734 WP_043867058.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10574.41 Da        Isoelectric Point: 5.2271

>NTDB_id=376515 FQV73_RS01785 WP_024085249.1 333956..334240(+) (abrB) [Bacillus velezensis strain LPL061]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=376515 FQV73_RS01785 WP_024085249.1 333956..334240(+) (abrB) [Bacillus velezensis strain LPL061]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGCGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACCGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGTAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAAGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543

Multiple sequence alignment