Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HPB8_RS02625 Genome accession   NC_014256
Coordinates   524861..525124 (-) Length   87 a.a.
NCBI ID   WP_001177716.1    Uniprot ID   T0EUE0
Organism   Helicobacter pylori B8     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 519861..530124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPB8_RS02605 (HPB8_546) - 520771..521907 (-) 1137 WP_000067692.1 VirB8/TrbF family protein -
  HPB8_RS08910 - 521900..522040 (-) 141 WP_000789929.1 hypothetical protein -
  HPB8_RS02615 (HPB8_548) - 522037..524613 (-) 2577 WP_000893946.1 VirB4 family type IV secretion/conjugal transfer ATPase -
  HPB8_RS02620 (HPB8_549) - 524613..524849 (-) 237 WP_001168532.1 hypothetical protein -
  HPB8_RS02625 (HPB8_550) comB3 524861..525124 (-) 264 WP_001177716.1 hypothetical protein Machinery gene
  HPB8_RS02630 (HPB8_551) comB2 525136..525420 (-) 285 WP_000736106.1 TrbC/VirB2 family protein Machinery gene
  HPB8_RS02635 (HPB8_552) - 525398..525775 (-) 378 WP_000571141.1 hypothetical protein -
  HPB8_RS02640 (HPB8_553) - 525768..525998 (-) 231 WP_000189079.1 hypothetical protein -
  HPB8_RS02645 (HPB8_554) - 526001..526789 (-) 789 WP_001140571.1 hypothetical protein -
  HPB8_RS02650 (HPB8_555) - 526839..527504 (+) 666 WP_041201762.1 hypothetical protein -
  HPB8_RS02655 (HPB8_556) - 527584..528657 (-) 1074 WP_001278345.1 tyrosine-type recombinase/integrase -
  HPB8_RS02660 (HPB8_558) - 529362..529919 (+) 558 WP_001101625.1 hypothetical protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 9970.83 Da        Isoelectric Point: 5.7206

>NTDB_id=37649 HPB8_RS02625 WP_001177716.1 524861..525124(-) (comB3) [Helicobacter pylori B8]
MQLVGISVSNLKEISSKEKFLWLNAKSFLLSGFVPFIMIPWLDILNSFVLYVCFLLIFSIAEFFDEDISDILIAHSKIKT
KANSFYA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=37649 HPB8_RS02625 WP_001177716.1 524861..525124(-) (comB3) [Helicobacter pylori B8]
ATGCAATTAGTTGGTATTTCAGTTTCTAATCTCAAAGAAATCAGCTCCAAAGAAAAATTTCTTTGGCTCAATGCTAAGAG
TTTTTTACTCTCAGGATTTGTGCCTTTTATTATGATACCTTGGCTAGATATATTGAACTCTTTTGTGCTTTATGTATGCT
TTCTCTTAATTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGTGACATTTTAATCGCTCATTCCAAAATTAAAACC
AAAGCTAATTCATTTTACGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

60.92

100

0.609

Multiple sequence alignment