Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   FQZ25_RS12785 Genome accession   NZ_CP042270
Coordinates   2442530..2442853 (-) Length   107 a.a.
NCBI ID   WP_000578885.1    Uniprot ID   A0A9W5VG71
Organism   Bacillus thuringiensis strain GA-A07     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2437530..2447853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQZ25_RS12760 (FQZ25_12775) - 2437861..2439147 (+) 1287 WP_000247031.1 D-alanyl-D-alanine carboxypeptidase family protein -
  FQZ25_RS12765 (FQZ25_12780) - 2439338..2439907 (+) 570 WP_000767792.1 signal peptidase I -
  FQZ25_RS12770 (FQZ25_12785) - 2439968..2440555 (+) 588 WP_000172852.1 CalY family protein -
  FQZ25_RS12775 (FQZ25_12790) - 2440690..2441478 (+) 789 WP_121868145.1 DUF4047 domain-containing protein -
  FQZ25_RS12780 (FQZ25_12795) calY 2441864..2442457 (+) 594 WP_000053713.1 biofilm matrix protein CalY -
  FQZ25_RS12785 (FQZ25_12800) sinR 2442530..2442853 (-) 324 WP_000578885.1 helix-turn-helix domain-containing protein Regulator
  FQZ25_RS12790 (FQZ25_12805) - 2442933..2443067 (-) 135 WP_000276219.1 anti-repressor SinI family protein -
  FQZ25_RS12795 (FQZ25_12810) inhA1 2443410..2445800 (+) 2391 WP_152305276.1 M6 family metalloprotease immune inhibitor InhA1 -
  FQZ25_RS12800 (FQZ25_12815) - 2445971..2447338 (+) 1368 WP_152305277.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12349.19 Da        Isoelectric Point: 9.6244

>NTDB_id=376489 FQZ25_RS12785 WP_000578885.1 2442530..2442853(-) (sinR) [Bacillus thuringiensis strain GA-A07]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKETNLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=376489 FQZ25_RS12785 WP_000578885.1 2442530..2442853(-) (sinR) [Bacillus thuringiensis strain GA-A07]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGGATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAACTAACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692

Multiple sequence alignment