Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   HPSAT_RS05580 Genome accession   NC_017359
Coordinates   1164704..1165753 (+) Length   349 a.a.
NCBI ID   WP_000115522.1    Uniprot ID   -
Organism   Helicobacter pylori Sat464     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1159704..1170753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPSAT_RS05565 (HPSAT_05730) - 1160344..1162107 (+) 1764 WP_000926192.1 hypothetical protein -
  HPSAT_RS05570 (HPSAT_05735) asd 1162287..1163327 (-) 1041 WP_000860920.1 aspartate-semialdehyde dehydrogenase -
  HPSAT_RS05575 (HPSAT_05740) hisS 1163314..1164642 (-) 1329 WP_000632529.1 histidine--tRNA ligase -
  HPSAT_RS05580 (HPSAT_05745) waaF 1164704..1165753 (+) 1050 WP_000115522.1 lipopolysaccharide heptosyltransferase II Regulator
  HPSAT_RS05585 (HPSAT_05750) - 1165946..1166272 (-) 327 WP_000744162.1 hypothetical protein -
  HPSAT_RS05590 (HPSAT_05755) fusA 1166815..1168893 (-) 2079 WP_000101891.1 elongation factor G -
  HPSAT_RS05595 (HPSAT_05760) rpsG 1168905..1169372 (-) 468 WP_001254362.1 30S ribosomal protein S7 -
  HPSAT_RS05600 (HPSAT_05765) rpsL 1169388..1169795 (-) 408 WP_001142321.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39617.47 Da        Isoelectric Point: 9.8197

>NTDB_id=37648 HPSAT_RS05580 WP_000115522.1 1164704..1165753(+) (waaF) [Helicobacter pylori Sat464]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNARFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPIRIGFAQFFRSLFLSHAVISAPKEYHQVEKYCFLFSQFLKKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAALLEEGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLFN
NAYNLCGKTSIEELIERIAILDLFITNDSGPMHVAASTQTPLIALFGPTDERETRPYKAQKTIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=37648 HPSAT_RS05580 WP_000115522.1 1164704..1165753(+) (waaF) [Helicobacter pylori Sat464]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCGTTTCATCTTAGTGGGCCCACAAATGACTTGCGAACTCTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTATTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTCCTTAGCCATGCGGTAATTTCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTGAAAAAAGAATTGGATAAAAAAAGCGTTTTGCCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGCTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAGATTTTAAAACTCATCAAAGGTTTATTAAAAAACCCTTTATTATTCAAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGCGCATCGCTATTTTGGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCCAGCACACAAACCCCCTTAATCGCTCTTTTTGGTCCCACTGATGAAAGAGAAA
CTCGCCCTTATAAAGCTCAAAAAACGATCGTGTTGAACCACCACCTAAGCTGTTCGCCATGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.353

97.421

0.364

Multiple sequence alignment