Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FQZ25_RS06860 Genome accession   NZ_CP042270
Coordinates   1301310..1302686 (+) Length   458 a.a.
NCBI ID   WP_152305115.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain GA-A07     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1296310..1307686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQZ25_RS06840 (FQZ25_06845) ctsR 1296507..1296968 (+) 462 WP_001244565.1 transcriptional regulator CtsR -
  FQZ25_RS06845 (FQZ25_06850) - 1297139..1297687 (+) 549 WP_000128399.1 UvrB/UvrC motif-containing protein -
  FQZ25_RS06850 (FQZ25_06855) - 1297692..1298756 (+) 1065 WP_000050842.1 protein arginine kinase -
  FQZ25_RS06855 (FQZ25_06860) clpC 1298779..1301214 (+) 2436 WP_152305114.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  FQZ25_RS06860 (FQZ25_06865) radA 1301310..1302686 (+) 1377 WP_152305115.1 DNA repair protein RadA Machinery gene
  FQZ25_RS06865 (FQZ25_06870) disA 1302690..1303763 (+) 1074 WP_000392163.1 DNA integrity scanning diadenylate cyclase DisA -
  FQZ25_RS06870 (FQZ25_06875) - 1303924..1305033 (+) 1110 WP_000919677.1 PIN/TRAM domain-containing protein -
  FQZ25_RS06875 (FQZ25_06880) ispD 1305050..1305730 (+) 681 WP_152305116.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  FQZ25_RS06880 (FQZ25_06885) ispF 1305847..1306323 (+) 477 WP_000488386.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49830.45 Da        Isoelectric Point: 7.1422

>NTDB_id=376475 FQZ25_RS06860 WP_152305115.1 1301310..1302686(+) (radA) [Bacillus thuringiensis strain GA-A07]
MAKKKTKFTCQECGYQSPKYMGKCPGCGQWNSLVEEMEPVVSSRRLNYANAIQTEVTKPRRLTEVETKSEARIETKFQEF
NRVLGGGIVDGSLVLIGGDPGIGKSTLLLQISSQLADASYDVLYISGEESAKQIKLRADRLHVNGSNLFVVSETDLQRIA
GHIEEMNPAFVVIDSIQTIHLPEVTSAPGSVAQVRECTAELMKLAKTKGIPIFIVGHVTKEGAIAGPRMLEHMVDAVLYF
EGDRHHTYRILRAVKNRFGSTNEMGIFEMKELGLAEVLNPSEIFLEERPVGVAGSTVVASMEGTRPVLVEIQALISPTSF
GNPRRMATGIDHNRVSLIMAVLEKRTGLLLQNQDAYLKVAGGLKLDEPAIDLAVALSIASSFRDKSTAPTDAVIGEVGLT
GEIRRVSRIEQRVQEAAKLGFQRAIIPRKNLGGWTIPEGIEVVGVSNLGEALRLTLGG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=376475 FQZ25_RS06860 WP_152305115.1 1301310..1302686(+) (radA) [Bacillus thuringiensis strain GA-A07]
ATGGCTAAAAAGAAAACAAAATTCACATGTCAAGAGTGTGGTTATCAATCACCAAAATATATGGGTAAATGTCCAGGGTG
TGGTCAATGGAATTCGCTTGTTGAAGAGATGGAACCCGTTGTATCATCCAGACGCCTAAATTATGCAAATGCAATTCAAA
CAGAAGTAACAAAACCAAGACGTCTTACAGAAGTAGAAACAAAGTCTGAGGCACGTATTGAAACAAAATTTCAAGAGTTT
AACCGTGTACTAGGTGGCGGAATTGTAGATGGATCTTTAGTACTTATTGGTGGGGACCCTGGGATTGGAAAATCAACGTT
ATTATTACAGATTTCCTCGCAATTAGCAGATGCTTCATATGATGTATTGTATATATCAGGTGAGGAGTCAGCAAAGCAGA
TTAAACTTCGTGCAGATCGTTTACATGTAAATGGTAGTAATCTATTTGTTGTATCAGAGACAGATTTACAGCGTATTGCA
GGACATATTGAAGAGATGAATCCTGCTTTTGTTGTTATTGATTCTATTCAAACGATACATTTACCTGAGGTAACATCAGC
TCCTGGTAGTGTGGCGCAAGTACGTGAATGTACAGCAGAATTAATGAAACTTGCAAAAACAAAGGGAATCCCAATTTTCA
TCGTAGGACATGTGACAAAAGAAGGTGCAATTGCGGGACCGCGTATGCTAGAACATATGGTTGATGCAGTTCTTTACTTT
GAAGGAGATCGACACCATACATATCGTATTTTACGAGCTGTAAAGAATCGTTTTGGTTCTACGAATGAAATGGGTATCTT
TGAAATGAAAGAACTTGGCCTTGCAGAAGTCTTAAATCCTTCTGAAATTTTCCTTGAGGAAAGACCAGTTGGAGTTGCAG
GTTCAACAGTAGTTGCCTCAATGGAAGGAACAAGACCAGTTTTAGTAGAAATACAGGCATTAATTTCCCCTACTAGTTTT
GGAAATCCTCGAAGAATGGCGACAGGAATTGATCATAATCGTGTCTCGCTTATTATGGCGGTACTAGAGAAAAGAACAGG
TTTACTATTACAAAATCAAGATGCGTATTTAAAAGTAGCTGGTGGTTTGAAATTAGACGAACCGGCAATTGATTTAGCTG
TCGCCTTAAGTATAGCTTCAAGTTTTAGAGATAAATCTACGGCACCAACTGATGCGGTAATAGGAGAAGTTGGATTAACT
GGAGAAATAAGAAGAGTATCAAGAATTGAACAACGTGTACAAGAAGCAGCTAAATTAGGATTTCAACGTGCTATCATTCC
TAGAAAAAATTTAGGGGGATGGACAATTCCAGAGGGGATTGAGGTTGTAGGTGTTTCTAATTTGGGAGAAGCGCTTCGTT
TGACATTAGGAGGCTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(363-430)

AAA domain (AAA_25)

(60-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

74.728

100

0.749
  radA Streptococcus pneumoniae Rx1

63.797

98.908

0.631
  radA Streptococcus pneumoniae D39

63.797

98.908

0.631
  radA Streptococcus pneumoniae R6

63.797

98.908

0.631
  radA Streptococcus pneumoniae TIGR4

63.797

98.908

0.631
  radA Streptococcus mitis NCTC 12261

63.797

98.908

0.631
  radA Streptococcus mitis SK321

63.797

98.908

0.631

Multiple sequence alignment