Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   HAP34_RS09305 Genome accession   NZ_CP050052
Coordinates   1990514..1990843 (+) Length   109 a.a.
NCBI ID   WP_003104586.1    Uniprot ID   Q9HZ87
Organism   Pseudomonas aeruginosa strain LIUYANG-E     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1985514..1995843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HAP34_RS09290 (HAP34_09320) - 1985557..1986576 (+) 1020 WP_003113413.1 glycosyltransferase family 4 protein -
  HAP34_RS09295 (HAP34_09325) - 1986654..1987761 (+) 1108 Protein_1846 IS3 family transposase -
  HAP34_RS09300 (HAP34_09330) - 1988326..1990323 (+) 1998 WP_010895647.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  HAP34_RS09305 (HAP34_09335) comEA/comE1 1990514..1990843 (+) 330 WP_003104586.1 ComEA family DNA-binding protein Machinery gene
  HAP34_RS09315 (HAP34_09345) - 1991060..1992256 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  HAP34_RS09320 (HAP34_09350) uvrB 1992444..1994456 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11351.31 Da        Isoelectric Point: 8.0459

>NTDB_id=376473 HAP34_RS09305 WP_003104586.1 1990514..1990843(+) (comEA/comE1) [Pseudomonas aeruginosa strain LIUYANG-E]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=376473 HAP34_RS09305 WP_003104586.1 1990514..1990843(+) (comEA/comE1) [Pseudomonas aeruginosa strain LIUYANG-E]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9HZ87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385

Multiple sequence alignment