Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   HPB8_RS00020 Genome accession   NC_014256
Coordinates   1756..3195 (+) Length   479 a.a.
NCBI ID   WP_000751653.1    Uniprot ID   D7FBK2
Organism   Helicobacter pylori B8     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPB8_RS00010 (HPB8_1) dnaA 154..1527 (+) 1374 WP_000380648.1 chromosomal replication initiator protein DnaA -
  HPB8_RS00020 (HPB8_2) comH 1756..3195 (+) 1440 WP_000751653.1 hypothetical protein Machinery gene
  HPB8_RS00030 (HPB8_3) - 3376..4128 (+) 753 WP_000767573.1 exodeoxyribonuclease III -
  HPB8_RS00035 (HPB8_4) - 4125..4760 (-) 636 WP_000649619.1 outer membrane protein -
  HPB8_RS00040 (HPB8_5) - 4764..5111 (-) 348 WP_000837045.1 hypothetical protein -
  HPB8_RS00045 (HPB8_6) recG 5193..7064 (+) 1872 WP_001158369.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 54757.65 Da        Isoelectric Point: 6.5953

>NTDB_id=37645 HPB8_RS00020 WP_000751653.1 1756..3195(+) (comH) [Helicobacter pylori B8]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETTLNPNRPTIPRNTQIVFSSKELKEAHAHQMPSLNAPMQKPQNKPSSSQQPSQNFSYPEPKLGSKNSKNSLLQPL
ATPSKISPTNEVKTPTNDTKPPLKHSSEDQENNLFITPPTEKTLPNDTSNADINESNESNENRDNVEKQAVRDANVKEFA
CGKWVYDDENLQAYRPSILKRVDEDKQTTTDITPCDYSTAENKSGKITTPYTKISVHKTEPLEEPQTFEAKNNFAILQAR
SSTEKCKRARVRKDGTTRQCYLIEEPLKQAWESEYEITTQLVKAIYERPKQDDQIEPTFYETSELAYSSTRKSEITQNEL
NLNEKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSKVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=37645 HPB8_RS00020 WP_000751653.1 1756..3195(+) (comH) [Helicobacter pylori B8]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
GATCAAAACTTCCCCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACAATCACTCACATATCCACTGCAATTGTTTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGACCTTAAACCCTAACCGCCCTACTATCCCTAGAAACACCCAAATTGTTTTTTCTTCAAAAGA
ATTGAAAGAAGCGCACGCGCACCAAATGCCTTCTTTAAACGCACCCATGCAAAAACCACAAAATAAACCCAGTTCATCGC
AACAACCTTCTCAAAACTTTTCTTACCCAGAGCCCAAACTAGGCTCTAAAAACTCTAAAAACAGCCTTTTACAGCCTTTA
GCAACTCCTAGCAAAATAAGCCCCACTAACGAAGTTAAAACGCCAACAAACGACACCAAACCCCCTTTAAAGCATTCTTC
AGAAGATCAAGAAAACAACCTTTTTATAACGCCACCCACCGAAAAAACGCTCCCTAACGACACCTCTAACGCTGATATTA
ATGAAAGCAATGAAAGTAACGAAAATAGAGACAATGTGGAAAAACAAGCCGTTAGAGATGCTAATGTTAAAGAATTTGCG
TGCGGGAAGTGGGTCTATGACGATGAAAACTTGCAAGCTTACCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAAACA
GACTACGACAGACATTACCCCTTGCGATTACAGCACCGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTATACTAAAA
TCTCTGTTCATAAAACAGAGCCTTTAGAAGAGCCACAAACTTTTGAAGCTAAAAACAATTTCGCCATTCTTCAAGCCAGA
AGCTCTACGGAAAAATGCAAAAGGGCTAGAGTGCGAAAAGACGGCACGACTAGGCAATGCTATCTAATAGAAGAGCCTTT
AAAACAAGCGTGGGAGAGTGAGTATGAAATCACCACGCAATTAGTGAAAGCCATTTATGAGCGCCCCAAACAAGACGATC
AAATAGAGCCGACTTTTTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCAAAACGAATTG
AATTTGAATGAAAAATTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAGAGCAGTGA
ATACAAAGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAACAGCCACGAG
CCAAAAGCACGCCTTTGAGTATTGAAAACTCTAAAGTTGTTTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D7FBK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

95.198

100

0.952

Multiple sequence alignment