Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   G9P52_RS08530 Genome accession   NZ_CP050047
Coordinates   1748389..1748994 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain 90-1     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1743389..1753994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G9P52_RS08510 (G9P52_08500) aes 1743530..1744489 (+) 960 WP_188027989.1 acetyl esterase -
  G9P52_RS08515 (G9P52_08505) hemH 1744486..1745448 (-) 963 WP_001250120.1 ferrochelatase -
  G9P52_RS08520 (G9P52_08510) adk 1745580..1746224 (-) 645 WP_001345715.1 adenylate kinase -
  G9P52_RS08525 (G9P52_08515) htpG 1746405..1748279 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  G9P52_RS08530 (G9P52_08520) recR 1748389..1748994 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  G9P52_RS08535 (G9P52_08525) ybaB 1748994..1749323 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  G9P52_RS08540 (G9P52_08530) dnaX 1749376..1751307 (-) 1932 WP_000122007.1 DNA polymerase III subunit gamma/tau -
  G9P52_RS08545 (G9P52_08535) apt 1751436..1751987 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  G9P52_RS08550 (G9P52_08540) ybaN 1752140..1752517 (-) 378 WP_001188905.1 DUF454 family protein -
  G9P52_RS08555 (G9P52_08545) priC 1752587..1753114 (+) 528 WP_000844848.1 primosomal replication protein N'' -
  G9P52_RS08560 (G9P52_08550) rsmS 1753128..1753289 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  G9P52_RS24040 - 1753342..1753440 (-) 99 Protein_1697 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=376391 G9P52_RS08530 WP_001195025.1 1748389..1748994(-) (recR) [Escherichia coli strain 90-1]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=376391 G9P52_RS08530 WP_001195025.1 1748389..1748994(-) (recR) [Escherichia coli strain 90-1]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443