Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   G9P52_RS00515 Genome accession   NZ_CP050047
Coordinates   106482..107909 (-) Length   475 a.a.
NCBI ID   WP_000980608.1    Uniprot ID   -
Organism   Escherichia coli strain 90-1     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 101482..112909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G9P52_RS00485 (G9P52_00485) yeeZ 101537..102361 (+) 825 WP_000754758.1 SDR family oxidoreductase -
  G9P52_RS00490 (G9P52_00490) yeeY 102407..103336 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  G9P52_RS00495 (G9P52_00495) yoeI 103551..103613 (+) 63 WP_010723108.1 membrane protein YoeI -
  G9P52_RS00500 (G9P52_00500) plaP 103603..104961 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  G9P52_RS00505 (G9P52_00505) tsuA 105140..106198 (+) 1059 WP_000492340.1 thiosulfate utilization transporter TsuA/YeeE -
  G9P52_RS00510 (G9P52_00510) tsuB 106212..106439 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  G9P52_RS00515 (G9P52_00515) sbcB 106482..107909 (-) 1428 WP_000980608.1 exodeoxyribonuclease I Machinery gene
  G9P52_RS00520 (G9P52_00520) dacD 108118..109284 (+) 1167 WP_039264491.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  G9P52_RS00525 (G9P52_00525) sbmC 109403..109876 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  G9P52_RS00530 (G9P52_00530) - 110074..110625 (+) 552 Protein_105 FUSC family protein -
  G9P52_RS00535 (G9P52_00535) - 110818..111798 (+) 981 WP_000399648.1 IS110-like element IS621 family transposase -
  G9P52_RS00540 (G9P52_00540) - 111893..112411 (+) 519 Protein_107 hypothetical protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54457.75 Da        Isoelectric Point: 5.6070

>NTDB_id=376372 G9P52_RS00515 WP_000980608.1 106482..107909(-) (sbcB) [Escherichia coli strain 90-1]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=376372 G9P52_RS00515 WP_000980608.1 106482..107909(-) (sbcB) [Escherichia coli strain 90-1]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCACTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGACGTTATGCGTGCCTGTTATGCCCTGCGCCCTGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTAATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACTGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCAGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGCG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCCGAATTTTTACAAGGTTATGCAGATGAATTACAGATGCTGGCACAACAAT
ATGCCGATAACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581

Multiple sequence alignment