Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   FQU71_RS14885 Genome accession   NZ_CP042254
Coordinates   3214342..3214875 (+) Length   177 a.a.
NCBI ID   WP_003635615.1    Uniprot ID   D3HKN3
Organism   Legionella longbeachae strain B3526CHC     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3209342..3219875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQU71_RS14870 (FQU71_14870) - 3209890..3211389 (-) 1500 WP_150866894.1 glycosyltransferase family 39 protein -
  FQU71_RS14875 (FQU71_14875) - 3211729..3213099 (+) 1371 WP_150866896.1 hypothetical protein -
  FQU71_RS14880 (FQU71_14880) - 3213391..3214242 (+) 852 WP_225316929.1 polysaccharide deacetylase family protein -
  FQU71_RS14885 (FQU71_14885) fimT 3214342..3214875 (+) 534 WP_003635615.1 GspH/FimT family pseudopilin Machinery gene
  FQU71_RS14890 (FQU71_14890) pilV 3214888..3215433 (+) 546 WP_150866900.1 type IV pilus modification protein PilV -
  FQU71_RS14895 (FQU71_14895) - 3215430..3216497 (+) 1068 WP_150866902.1 PilW family protein -
  FQU71_RS14900 (FQU71_14900) - 3216494..3217063 (+) 570 WP_150866905.1 pilus assembly protein -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 18726.72 Da        Isoelectric Point: 6.8740

>NTDB_id=376347 FQU71_RS14885 WP_003635615.1 3214342..3214875(+) (fimT) [Legionella longbeachae strain B3526CHC]
MKVIIINKQGFTLIELLITILVFCILLVLAIPALSSLLMNNRLIAKTDMFVNSLNYARNTALGESINVVVCPFGVAQSTT
CGGSWSNGWIVITQPSVGTSTLLQSQQLFSVDPVLSGNVPSVVFDPHGLTTTSGNFKFCDSRGGAFARSIEVLATGFVQS
GATPGQAVWDNSALTCP

Nucleotide


Download         Length: 534 bp        

>NTDB_id=376347 FQU71_RS14885 WP_003635615.1 3214342..3214875(+) (fimT) [Legionella longbeachae strain B3526CHC]
TTGAAAGTCATAATAATAAACAAGCAGGGATTCACATTAATTGAGCTCTTAATCACTATATTAGTTTTTTGTATTTTATT
AGTTTTAGCAATACCGGCATTGAGTAGCCTGCTGATGAATAATCGCCTGATTGCCAAAACAGATATGTTCGTAAATTCGC
TTAATTATGCGCGCAATACCGCTTTAGGCGAGTCAATCAACGTTGTAGTTTGTCCATTTGGCGTAGCTCAATCGACAACA
TGCGGCGGTAGTTGGAGCAATGGATGGATTGTGATCACACAACCTTCTGTAGGTACGAGCACCTTATTACAAAGCCAACA
ACTTTTTTCTGTTGATCCTGTACTTTCAGGCAATGTACCCAGCGTAGTATTTGACCCACACGGATTGACAACGACATCAG
GTAACTTTAAGTTTTGCGACAGTAGAGGAGGGGCATTTGCTCGCTCCATAGAAGTATTGGCAACTGGATTCGTACAATCA
GGCGCAACCCCCGGACAGGCAGTTTGGGATAACAGCGCGCTTACATGTCCTTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-30)

Type II transport protein GspH (GspH)

(49-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D3HKN3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Legionella pneumophila strain Lp02

60.714

94.915

0.576

Multiple sequence alignment