Detailed information NTG0376312

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: G9P51_RS04975
• Genome accession: NZ_CP050044
• Coordinates: 1056579..1057571 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 74-2
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1051579..1062571

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
G9P51_RS04945 (G9P51_04965)	ispD	1051640..1052350 (+)	711	WP_000246135.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
G9P51_RS04950 (G9P51_04970)	ispF	1052350..1052829 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
G9P51_RS04955 (G9P51_04975)	truD	1052826..1053875 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
G9P51_RS04960 (G9P51_04980)	surE	1053856..1054617 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
G9P51_RS04965 (G9P51_04985)	pcm	1054611..1055237 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
G9P51_RS04970 (G9P51_04990)	nlpD	1055422..1056516 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
G9P51_RS04975 (G9P51_04995)	rpoS	1056579..1057571 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
G9P51_RS04980 (G9P51_05000)	ygbN	1057665..1059029 (-)	1365	WP_182123329.1	GntP family transporter	-
G9P51_RS04985 (G9P51_05005)	ygbM	1059118..1059894 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
G9P51_RS04990 (G9P51_05010)	ygbL	1059899..1060537 (-)	639	WP_001278994.1	aldolase	-
G9P51_RS04995 (G9P51_05015)	otnK	1060534..1061796 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=376312 G9P51_RS04975 WP_000081550.1 1056579..1057571(+) (rpoS) [Escherichia coli strain 74-2]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=376312 G9P51_RS04975 WP_000081550.1 1056579..1057571(+) (rpoS) [Escherichia coli strain 74-2]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715