Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   FQB22_RS21090 Genome accession   NZ_CP042252
Coordinates   4088401..4089201 (-) Length   266 a.a.
NCBI ID   WP_003183361.1    Uniprot ID   -
Organism   Bacillus licheniformis strain KNU11     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 4083401..4094201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQB22_RS21055 - 4084591..4084845 (+) 255 WP_003183348.1 DUF2627 domain-containing protein -
  FQB22_RS21060 - 4084896..4085621 (-) 726 WP_003183351.1 glycerophosphodiester phosphodiesterase -
  FQB22_RS21065 - 4085755..4086376 (-) 622 Protein_4105 N-acetylmuramoyl-L-alanine amidase family protein -
  FQB22_RS21070 - 4086412..4086873 (-) 462 WP_016885940.1 hypothetical protein -
  FQB22_RS21080 - 4087219..4087602 (-) 384 WP_003183357.1 serine O-acetyltransferase -
  FQB22_RS21085 - 4087733..4087936 (-) 204 WP_231082760.1 LCI fold-containing protein -
  FQB22_RS21090 spo0A 4088401..4089201 (-) 801 WP_003183361.1 sporulation transcription factor Spo0A Regulator
  FQB22_RS21095 spoIVB 4089491..4090807 (-) 1317 WP_044051837.1 SpoIVB peptidase -
  FQB22_RS21100 recN 4090957..4092687 (-) 1731 WP_003183366.1 DNA repair protein RecN Machinery gene
  FQB22_RS21105 ahrC 4092719..4093168 (-) 450 WP_003183369.1 transcriptional regulator AhrC/ArgR -
  FQB22_RS21110 - 4093334..4094179 (-) 846 WP_003183371.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29541.06 Da        Isoelectric Point: 6.6109

>NTDB_id=376310 FQB22_RS21090 WP_003183361.1 4088401..4089201(-) (spo0A) [Bacillus licheniformis strain KNU11]
MEKIKVCVADDNRELVGLLSEYIEGQSDMEVLGVAYNGQECLSLFKDKEPDVLVLDIIMPHLDGLAVLERLRESQLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGSQLTHRAPSSQSSVLRPQPESPKKNLDASITTII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MSKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=376310 FQB22_RS21090 WP_003183361.1 4088401..4089201(-) (spo0A) [Bacillus licheniformis strain KNU11]
GTGGAGAAAATTAAAGTATGTGTTGCTGATGATAACAGGGAGCTTGTCGGCCTATTAAGCGAATATATCGAGGGACAGAG
CGACATGGAAGTGCTTGGTGTCGCATACAACGGACAGGAATGCCTTTCTTTGTTTAAAGACAAGGAGCCCGACGTGCTTG
TGCTGGATATAATCATGCCTCATCTCGACGGATTGGCCGTTCTTGAAAGGCTGAGGGAATCGCAGCTTAAAAAGCAGCCG
AATGTCATCATGCTGACGGCGTTCGGCCAGGAAGACGTGACCAAAAAAGCTGTAGATTTAGGCGCGTCGTATTTTATTTT
GAAGCCTTTTGACATGGAGAATTTAGTCGGACATATCCGCCAGGTCAGCGGAAACGGATCTCAATTGACACACCGTGCCC
CGTCCTCTCAAAGCAGTGTGCTTCGGCCGCAGCCTGAATCGCCGAAGAAAAACCTGGACGCCAGCATCACGACCATCATC
CACGAAATCGGCGTACCTGCTCATATTAAAGGCTATTTGTACTTAAGAGAAGCCATCTCCATGGTATATAACGACATCGA
ACTGCTCGGCAGCATTACAAAAGTGCTTTATCCGGATATCGCCAAAAAATTCAACACGACTGCAAGCCGCGTCGAACGGG
CGATTCGCCACGCCATCGAAGTCGCATGGAGCAGAGGCAACATCGACTCGATTTCGTCACTTTTCGGCTACACAGTCAGC
ATGTCAAAAGCAAAGCCGACCAATAGTGAGTTCATCGCGATGGTCGCAGACAAGCTGAGACTGGAGCATAAGGCTTCTTA
A

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-119)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

92.135

100

0.925

Multiple sequence alignment