Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   FQB22_RS08120 Genome accession   NZ_CP042252
Coordinates   1592425..1593537 (+) Length   370 a.a.
NCBI ID   WP_003178089.1    Uniprot ID   A0A415J9T0
Organism   Bacillus licheniformis strain KNU11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1587425..1598537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQB22_RS08095 rnpA 1588154..1588513 (-) 360 WP_003178055.1 ribonuclease P protein component -
  FQB22_RS08100 rpmH 1588598..1588732 (-) 135 WP_003178075.1 50S ribosomal protein L34 -
  FQB22_RS08105 dnaA 1589372..1590712 (+) 1341 WP_009330034.1 chromosomal replication initiator protein DnaA -
  FQB22_RS08110 dnaN 1590889..1592025 (+) 1137 WP_003178080.1 DNA polymerase III subunit beta -
  FQB22_RS08115 yaaA 1592193..1592408 (+) 216 WP_003178084.1 S4 domain-containing protein YaaA -
  FQB22_RS08120 recF 1592425..1593537 (+) 1113 WP_003178089.1 DNA replication/repair protein RecF Machinery gene
  FQB22_RS08125 remB 1593555..1593797 (+) 243 WP_003178090.1 extracellular matrix regulator RemB -
  FQB22_RS08130 gyrB 1593857..1595770 (+) 1914 WP_009330043.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  FQB22_RS08135 gyrA 1595961..1598429 (+) 2469 WP_003178095.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42482.33 Da        Isoelectric Point: 6.7331

>NTDB_id=376273 FQB22_RS08120 WP_003178089.1 1592425..1593537(+) (recF) [Bacillus licheniformis strain KNU11]
MYIQNLTLSSYRNYERLDLQFENKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDKELIRWDEDYAKIEGRVIKKNGS
VPIQLVISKKGKKGKVNHIEQQKLSQYVGAVNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQR
NHFLKQLQTRKQTDQTMLDVLTEQLTEFAAKVVMKRLQFVDQLEKWAQPIHSGISRGLEELTLKYHTSLHVSDSPDLSKM
INSYQETFSKLRDKEIERGVSLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIQEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHKTLNEAEIFRVENGTLSD

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=376273 FQB22_RS08120 WP_003178089.1 1592425..1593537(+) (recF) [Bacillus licheniformis strain KNU11]
TTGTATATCCAAAATCTTACATTATCGTCTTACCGTAATTATGAGCGCCTTGACCTTCAATTTGAGAACAAAGTGAACGT
GATTATCGGAGAGAACGCTCAAGGAAAAACAAATTTGATGGAAGCGATCTATGTGCTTGCGATGGCGAAATCCCATCGGA
CGTCAAATGATAAAGAACTCATACGATGGGATGAAGACTATGCTAAAATAGAAGGCAGGGTCATTAAAAAAAACGGTTCT
GTTCCCATTCAGCTTGTGATTTCCAAAAAAGGAAAAAAAGGTAAAGTGAATCATATTGAACAGCAGAAGCTGAGCCAGTA
TGTCGGGGCTGTCAACACGATTATGTTCGCGCCGGAGGATTTAAATCTCGTAAAAGGAAGTCCTCAGGTCAGAAGAAGGT
TTCTCGACATGGAAATCGGCCAAGTATCACCTGTCTATCTTCATGACCTTTCTCTTTACCAAAAAATCCTTTCACAACGG
AATCATTTCTTGAAGCAGCTTCAAACGAGAAAGCAAACCGATCAAACGATGCTTGACGTGCTGACGGAACAGCTTACGGA
ATTCGCGGCAAAGGTTGTGATGAAACGGCTTCAGTTTGTCGATCAGCTTGAAAAATGGGCTCAGCCCATTCATTCCGGAA
TTTCAAGAGGTCTGGAAGAGCTGACGTTAAAGTATCATACGTCTCTTCACGTATCAGATTCGCCCGATTTGTCGAAAATG
ATCAATAGTTATCAAGAAACGTTTTCTAAATTAAGAGATAAAGAAATAGAACGGGGGGTATCTCTTTCAGGTCCCCACAG
GGATGATGTTCTTTTCTATGTCAATGGCCGTGATGTGCAGACTTACGGATCGCAGGGCCAGCAGCGCACGACTGCATTGT
CGCTTAAATTGGCTGAAATCGACTTGATTCAGGAAGAGATAGGAGAATACCCGATTCTGCTTTTGGATGATGTTTTATCA
GAGCTGGACGACTATCGGCAGTCTCACTTGCTCCACACCATTCAAGGCCGCGTTCAAACATTCGTAACAACGACAAGCGT
TGATGGAATTGATCATAAAACCTTAAACGAAGCGGAAATCTTTCGTGTTGAAAATGGCACGCTATCGGACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A415J9T0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

89.13

99.459

0.886

Multiple sequence alignment