Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   FQB22_RS00120 Genome accession   NZ_CP042252
Coordinates   23556..24185 (-) Length   209 a.a.
NCBI ID   WP_003183693.1    Uniprot ID   Q8VQ77
Organism   Bacillus licheniformis strain KNU11     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 18556..29185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQB22_RS00095 rpsT 18770..19036 (+) 267 WP_003183682.1 30S ribosomal protein S20 -
  FQB22_RS00100 holA 19098..20141 (-) 1044 WP_025804972.1 DNA polymerase III subunit delta -
  FQB22_RS00105 - 20371..20502 (+) 132 WP_003183686.1 YqzM family protein -
  FQB22_RS00110 - 20527..22914 (-) 2388 WP_009327865.1 DNA internalization-related competence protein ComEC/Rec2 -
  FQB22_RS00115 - 22918..23487 (-) 570 WP_003183690.1 ComE operon protein 2 -
  FQB22_RS00120 comEA 23556..24185 (-) 630 WP_003183693.1 helix-hairpin-helix domain-containing protein Machinery gene
  FQB22_RS00125 comER 24269..25090 (+) 822 WP_003183696.1 late competence protein ComER -
  FQB22_RS00130 - 25160..25915 (-) 756 WP_003183697.1 class I SAM-dependent DNA methyltransferase -
  FQB22_RS00135 rsfS 25912..26268 (-) 357 WP_003183699.1 ribosome silencing factor -
  FQB22_RS00140 yqeK 26282..26845 (-) 564 WP_003183701.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  FQB22_RS00145 - 26835..27404 (-) 570 WP_003183702.1 nicotinate-nucleotide adenylyltransferase -
  FQB22_RS00150 yhbY 27423..27713 (-) 291 WP_003183704.1 ribosome assembly RNA-binding protein YhbY -
  FQB22_RS00155 aroE 27707..28543 (-) 837 WP_003183706.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 22468.42 Da        Isoelectric Point: 5.1890

>NTDB_id=376247 FQB22_RS00120 WP_003183693.1 23556..24185(-) (comEA) [Bacillus licheniformis strain KNU11]
MTDWLKQYKWHAAGGVALVLIISAAFMLLSGKRETSSGLSIPEEASAQTYDKKEEVKREKSAGKEAVIIDLKGAVKNPGV
YQMKEGDRVHDVLKKAGGTEKKADQKQINLAAVLQDGMVVYIPFEGEEAADSFSKAGSRADGASVDIVNINTASSEELQA
IPGIGPSKAEAVIEYREENGPFHTVEDITNVSGIGEKSFERIKSAITVK

Nucleotide


Download         Length: 630 bp        

>NTDB_id=376247 FQB22_RS00120 WP_003183693.1 23556..24185(-) (comEA) [Bacillus licheniformis strain KNU11]
TTGACAGATTGGCTAAAACAATATAAATGGCATGCTGCGGGAGGCGTTGCACTCGTCTTGATCATCAGCGCTGCCTTCAT
GCTGTTAAGCGGAAAGCGTGAAACTTCATCCGGCCTCTCCATTCCCGAGGAGGCTTCTGCACAGACGTATGACAAGAAGG
AGGAGGTGAAACGGGAAAAAAGCGCGGGAAAAGAGGCGGTTATCATCGATTTGAAAGGCGCTGTGAAAAATCCGGGCGTC
TATCAAATGAAAGAGGGAGACAGGGTCCACGATGTATTGAAAAAAGCAGGCGGCACCGAGAAAAAAGCGGATCAAAAGCA
AATTAACCTTGCAGCCGTTTTGCAGGACGGTATGGTGGTTTACATTCCATTTGAGGGGGAAGAGGCTGCTGATTCTTTCT
CGAAAGCGGGTTCAAGGGCAGATGGCGCTTCCGTCGATATCGTCAATATCAATACGGCTTCCTCTGAGGAGCTTCAGGCG
ATTCCCGGCATCGGCCCTTCAAAAGCGGAAGCGGTTATCGAATACCGCGAGGAGAACGGACCGTTTCACACGGTAGAAGA
CATAACAAACGTTTCGGGAATTGGAGAAAAGTCTTTTGAAAGAATAAAATCTGCAATCACGGTAAAGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(147-207)

SLBB domain (SLBB)

(69-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8VQ77

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

51.402

100

0.526

Multiple sequence alignment