Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   G9P50_RS08270 Genome accession   NZ_CP050040
Coordinates   1759494..1760921 (-) Length   475 a.a.
NCBI ID   WP_000980620.1    Uniprot ID   -
Organism   Escherichia coli strain 63-2     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1754494..1765921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G9P50_RS08240 (G9P50_08240) yeeZ 1754549..1755373 (+) 825 WP_000754749.1 SDR family oxidoreductase -
  G9P50_RS08245 (G9P50_08245) yeeY 1755419..1756348 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  G9P50_RS08250 (G9P50_08250) yoeI 1756563..1756625 (+) 63 WP_010723108.1 membrane protein YoeI -
  G9P50_RS08255 (G9P50_08255) plaP 1756615..1757973 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  G9P50_RS08260 (G9P50_08260) tsuA 1758152..1759210 (+) 1059 WP_053276361.1 thiosulfate utilization transporter TsuA/YeeE -
  G9P50_RS08265 (G9P50_08265) tsuB 1759224..1759451 (+) 228 WP_000985280.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  G9P50_RS08270 (G9P50_08270) sbcB 1759494..1760921 (-) 1428 WP_000980620.1 exodeoxyribonuclease I Machinery gene
  G9P50_RS08275 (G9P50_08275) dacD 1761130..1762296 (+) 1167 WP_001442313.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  G9P50_RS08280 (G9P50_08280) sbmC 1762415..1762888 (+) 474 WP_001105414.1 DNA gyrase inhibitor SbmC -
  G9P50_RS08285 (G9P50_08285) yeeA 1763087..1764145 (+) 1059 WP_001200891.1 FUSC family protein -
  G9P50_RS08290 (G9P50_08290) tmaR 1764317..1764646 (+) 330 WP_000450409.1 DUF496 family protein -
  G9P50_RS08295 (G9P50_08295) - 1764747..1764938 (-) 192 Protein_1639 EutP/PduV family microcompartment system protein -
  G9P50_RS08300 (G9P50_08300) cobU 1765105..1765650 (+) 546 WP_053276360.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54500.81 Da        Isoelectric Point: 5.4740

>NTDB_id=376246 G9P50_RS08270 WP_000980620.1 1759494..1760921(-) (sbcB) [Escherichia coli strain 63-2]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAIPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=376246 G9P50_RS08270 WP_000980620.1 1759494..1760921(-) (sbcB) [Escherichia coli strain 63-2]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGAATATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCATTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGTTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.298

98.947

0.577