Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   G9P49_RS05185 Genome accession   NZ_CP050036
Coordinates   1071800..1072315 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain 58-3     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1066800..1077315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G9P49_RS05140 (G9P49_05130) csrA 1067387..1067572 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  G9P49_RS05170 (G9P49_05160) yqaB 1069030..1069596 (+) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  G9P49_RS05175 (G9P49_05165) yqaA 1069593..1070021 (+) 429 WP_098704344.1 YqaA family protein -
  G9P49_RS05180 (G9P49_05170) gshA 1070094..1071650 (+) 1557 WP_000611812.1 glutamate--cysteine ligase -
  G9P49_RS05185 (G9P49_05175) luxS 1071800..1072315 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  G9P49_RS05190 (G9P49_05180) emrB 1072379..1073917 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  G9P49_RS05195 (G9P49_05185) emrA 1073934..1075106 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  G9P49_RS05200 (G9P49_05190) emrR 1075233..1075763 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  G9P49_RS05205 (G9P49_05200) ygaH 1075854..1076189 (-) 336 WP_182116853.1 L-valine transporter subunit YgaH -
  G9P49_RS05210 (G9P49_05205) ygaZ 1076179..1076916 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=376159 G9P49_RS05185 WP_001130211.1 1071800..1072315(+) (luxS) [Escherichia coli strain 58-3]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=376159 G9P49_RS05185 WP_001130211.1 1071800..1072315(+) (luxS) [Escherichia coli strain 58-3]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731