Detailed information NTG0376156

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: G9P49_RS04910
• Genome accession: NZ_CP050036
• Coordinates: 1018980..1019972 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 58-3
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1013980..1024972

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
G9P49_RS04880 (G9P49_04870)	ispD	1014041..1014751 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
G9P49_RS04885 (G9P49_04875)	ispF	1014751..1015230 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
G9P49_RS04890 (G9P49_04880)	truD	1015227..1016276 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
G9P49_RS04895 (G9P49_04885)	surE	1016257..1017018 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
G9P49_RS04900 (G9P49_04890)	pcm	1017012..1017638 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
G9P49_RS04905 (G9P49_04895)	nlpD	1017823..1018917 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
G9P49_RS04910 (G9P49_04900)	rpoS	1018980..1019972 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
G9P49_RS04915 (G9P49_04905)	ygbN	1020066..1021430 (-)	1365	WP_094322355.1	GntP family transporter	-
G9P49_RS04920 (G9P49_04910)	ygbM	1021519..1022295 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
G9P49_RS04925 (G9P49_04915)	ygbL	1022300..1022938 (-)	639	WP_001278994.1	aldolase	-
G9P49_RS04930 (G9P49_04920)	otnK	1022935..1024197 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=376156 G9P49_RS04910 WP_000081550.1 1018980..1019972(+) (rpoS) [Escherichia coli strain 58-3]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=376156 G9P49_RS04910 WP_000081550.1 1018980..1019972(+) (rpoS) [Escherichia coli strain 58-3]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715