Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FQB35_RS01460 Genome accession   NZ_CP042243
Coordinates   324918..326288 (+) Length   456 a.a.
NCBI ID   WP_148808210.1    Uniprot ID   -
Organism   Crassaminicella thermophila strain SY095     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 319918..331288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQB35_RS01445 (FQB35_01445) - 320852..323299 (+) 2448 WP_207707366.1 ATP-dependent Clp protease ATP-binding subunit -
  FQB35_RS01450 (FQB35_01450) - 323435..323875 (+) 441 WP_148808208.1 ACT domain-containing protein -
  FQB35_RS01455 (FQB35_01455) thrB 323894..324775 (+) 882 WP_148808209.1 homoserine kinase -
  FQB35_RS01460 (FQB35_01460) radA 324918..326288 (+) 1371 WP_148808210.1 DNA repair protein RadA Machinery gene
  FQB35_RS01465 (FQB35_01465) disA 326370..327458 (+) 1089 WP_148808211.1 DNA integrity scanning diadenylate cyclase DisA -
  FQB35_RS01470 (FQB35_01470) - 327491..327886 (-) 396 WP_148808212.1 DUF1573 domain-containing protein -
  FQB35_RS01475 (FQB35_01475) - 328211..328687 (+) 477 WP_148808213.1 CarD family transcriptional regulator -
  FQB35_RS01480 (FQB35_01480) - 328844..329962 (+) 1119 WP_148808214.1 PIN/TRAM domain-containing protein -
  FQB35_RS01485 (FQB35_01485) ispD 330019..330732 (+) 714 WP_333473042.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  FQB35_RS01490 (FQB35_01490) ispF 330745..331230 (+) 486 WP_148808216.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50069.13 Da        Isoelectric Point: 6.6495

>NTDB_id=376133 FQB35_RS01460 WP_148808210.1 324918..326288(+) (radA) [Crassaminicella thermophila strain SY095]
MAKKEKTIFVCQNCGYESPKWMGQCVCGKWNTMVEEKVVSISQYKKSPTITSSTKPLPIKEIKSGSYDRFDTHIEELNRV
LGGGLVKGSLTLISGEPGIGKSTLILQASSIIAKEYGIVLYVSGEESEEQIKMRAERLNAIEDRLMIVSETNVDVIKEYI
NQLNPVLVIIDSIQTLFKPDLSSAPGSVSQVRECTNQIMYTAKTRDIPIFIVAHVTKTGELAGPRILEHLVDTVLHFTGE
RTQEFRVIRALKNRFGTTSEIGVFEMKEEGLVEVSNPSEIFLEGLTDTEGAIVISSLEGTRPLLLEVQALVAPTNLGFAR
RASIGIDINRLNLILAVLEKKVGVPLMNQDVYVNVVGGLKPEGTSSDLGVALAIYSSMRGLSIHTTTTIAIGEIGLTGEL
RPVSNIEKMIKEAGKMGFKKCILPKKSTKKIQLNESIQLVGANSLKEAIDYMFFEN

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=376133 FQB35_RS01460 WP_148808210.1 324918..326288(+) (radA) [Crassaminicella thermophila strain SY095]
ATGGCAAAAAAAGAAAAAACTATTTTTGTGTGCCAAAACTGTGGATATGAAAGCCCTAAATGGATGGGGCAGTGTGTATG
TGGTAAATGGAATACTATGGTAGAAGAAAAAGTAGTATCAATAAGTCAATATAAAAAGTCACCTACTATTACGAGTTCTA
CAAAACCATTACCTATAAAAGAAATAAAATCTGGTTCTTATGATAGATTTGACACTCATATAGAAGAATTAAACCGTGTA
TTAGGAGGAGGGTTGGTAAAGGGATCATTAACACTAATTTCAGGTGAGCCAGGTATTGGTAAATCTACTTTGATCCTACA
AGCTAGCAGTATAATTGCTAAGGAATATGGCATAGTACTTTATGTTTCGGGAGAAGAATCAGAAGAGCAAATAAAAATGC
GTGCTGAAAGGCTAAATGCAATAGAAGATAGATTAATGATTGTATCAGAAACTAATGTAGATGTGATTAAAGAATATATT
AATCAATTAAATCCTGTTCTTGTGATTATAGATTCAATACAGACACTATTTAAACCAGATTTATCATCTGCTCCTGGTAG
TGTTTCTCAAGTTAGAGAATGTACAAATCAGATTATGTATACAGCAAAAACGAGAGATATACCTATATTTATTGTAGCTC
ATGTAACAAAAACAGGAGAATTGGCAGGGCCTAGAATTCTTGAGCATCTTGTTGATACAGTACTACATTTTACTGGGGAG
CGAACCCAAGAATTTAGAGTAATTAGGGCTTTGAAAAATCGTTTTGGAACTACTAGTGAAATTGGTGTTTTTGAGATGAA
AGAAGAAGGTTTGGTAGAAGTTTCTAATCCATCAGAAATATTTTTAGAAGGATTAACGGATACAGAAGGAGCTATTGTTA
TAAGTAGTTTAGAAGGAACGAGACCTTTGCTTTTAGAAGTTCAGGCGTTGGTTGCACCAACGAATCTGGGTTTTGCAAGA
AGAGCATCTATAGGTATAGATATAAATCGATTAAATTTAATATTAGCAGTCTTAGAGAAAAAAGTAGGAGTTCCTCTAAT
GAATCAAGATGTTTATGTAAATGTTGTAGGTGGACTTAAGCCTGAAGGAACCTCATCAGACTTAGGAGTGGCATTAGCTA
TATATTCAAGCATGAGAGGATTATCAATTCATACTACCACTACCATTGCTATTGGGGAAATTGGTCTAACCGGAGAATTA
AGACCTGTTTCAAATATTGAAAAAATGATTAAAGAAGCAGGAAAAATGGGATTTAAAAAATGTATATTACCTAAAAAGAG
TACAAAAAAAATACAACTGAATGAATCTATTCAGTTAGTAGGAGCAAATTCTCTAAAAGAGGCAATAGATTATATGTTTT
TTGAAAATTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(341-426)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

AAA domain (AAA_25)

(61-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

51.209

99.781

0.511
  radA Streptococcus pneumoniae Rx1

51.209

99.781

0.511
  radA Streptococcus pneumoniae D39

51.209

99.781

0.511
  radA Streptococcus pneumoniae TIGR4

51.209

99.781

0.511
  radA Bacillus subtilis subsp. subtilis str. 168

51.663

98.904

0.511
  radA Streptococcus mitis SK321

50.989

99.781

0.509
  radA Streptococcus mitis NCTC 12261

50.989

99.781

0.509

Multiple sequence alignment