Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   G9P48_RS08775 Genome accession   NZ_CP050031
Coordinates   1841658..1843085 (-) Length   475 a.a.
NCBI ID   WP_001402309.1    Uniprot ID   -
Organism   Escherichia coli strain 33-6     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1836658..1848085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G9P48_RS08745 (G9P48_08740) yeeZ 1836713..1837537 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  G9P48_RS08750 (G9P48_08745) yeeY 1837583..1838512 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  G9P48_RS08755 (G9P48_08750) yoeI 1838727..1838789 (+) 63 WP_010723108.1 membrane protein YoeI -
  G9P48_RS08760 (G9P48_08755) plaP 1838779..1840137 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  G9P48_RS08765 (G9P48_08760) tsuA 1840316..1841374 (+) 1059 WP_000492315.1 thiosulfate utilization transporter TsuA/YeeE -
  G9P48_RS08770 (G9P48_08765) tsuB 1841388..1841615 (+) 228 WP_000985280.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  G9P48_RS08775 (G9P48_08770) sbcB 1841658..1843085 (-) 1428 WP_001402309.1 exodeoxyribonuclease I Machinery gene
  G9P48_RS08780 (G9P48_08775) dacD 1843294..1844460 (+) 1167 WP_000830150.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  G9P48_RS08785 (G9P48_08780) sbmC 1844579..1845052 (+) 474 WP_001105383.1 DNA gyrase inhibitor SbmC -
  G9P48_RS08790 (G9P48_08785) yeeA 1845250..1846308 (+) 1059 WP_001200891.1 FUSC family protein -
  G9P48_RS08795 (G9P48_08790) tmaR 1846480..1846809 (+) 330 WP_000450409.1 DUF496 family protein -
  G9P48_RS08800 (G9P48_08795) - 1846910..1847092 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  G9P48_RS08805 (G9P48_08800) - 1847146..1847292 (+) 147 Protein_1742 transposase domain-containing protein -
  G9P48_RS08810 (G9P48_08805) - 1847581..1847661 (-) 81 Protein_1743 hypothetical protein -
  G9P48_RS08815 (G9P48_08810) yeeW 1847707..1847901 (-) 195 WP_000988599.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54498.80 Da        Isoelectric Point: 5.6102

>NTDB_id=376090 G9P48_RS08775 WP_001402309.1 1841658..1843085(-) (sbcB) [Escherichia coli strain 33-6]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLNNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=376090 G9P48_RS08775 WP_001402309.1 1841658..1843085(-) (sbcB) [Escherichia coli strain 33-6]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTGCCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTAACGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGAATATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCAATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579